Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30216.Seq
(367 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 92 1e-19
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 1e-16
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 64 4e-11
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 62 1e-10
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 62 1e-10
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 61 2e-10
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 61 2e-10
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 57 5e-09
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 55 2e-08
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 5e-08
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 39 0.001
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 38 0.003
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 36 0.008
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 36 0.010
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 34 0.031
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 33 0.094
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 31 0.38
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058) 29 0.87
SB_13271| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.87
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 29 1.5
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1) 28 2.7
SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06) 28 2.7
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_19767| Best HMM Match : ADK (HMM E-Value=0.26) 27 3.5
SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 26 8.1
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 92.3 bits (219), Expect = 1e-19
Identities = 39/73 (53%), Positives = 55/73 (75%)
Frame = +2
Query: 35 MRVLIFTAIALLGLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLA 214
M++L +AL+ LA +E+ EE+VLVL++ NF+ + +++LVEFYAPWCGHCK+LA
Sbjct: 1 MKLLPVLLLALVSLAYSEEIKEEEDVLVLTEKNFDEAVAANKHVLVEFYAPWCGHCKALA 60
Query: 215 PEYAKAATKLAEE 253
PEYAKAA +L E
Sbjct: 61 PEYAKAAGQLKSE 73
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 253 RSPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSP 363
+S IKLAKVDAT E L E + V+GYPT+KFF++G P
Sbjct: 74 KSEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKP 110
Score = 50.4 bits (115), Expect = 4e-07
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 20 ADNIEMRVLIFTAIALLGLALGDEVPTE---ENVLVLSKANFETVITTTEY-ILVEFYAP 187
++N++ V F L L E+P + + V VL NF+ V + + VEFYAP
Sbjct: 353 SENVKEFVQAFLDKKLKPHLLSAEIPEDWDSKPVKVLCGKNFDEVARNKDKNVFVEFYAP 412
Query: 188 WCGHCKSLAPEYAKAATK 241
WCGHCK LAP + + K
Sbjct: 413 WCGHCKQLAPIWDQLGEK 430
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 82.2 bits (194), Expect = 1e-16
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 86 DEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
DEV E++V VL+ NF+ VI ILVEFYAPWCGHCKSLAPEYAKAA K+ D
Sbjct: 55 DEVKEEDDVSVLNSKNFDRVIEENNIILVEFYAPWCGHCKSLAPEYAKAAKKMKLND 111
Score = 68.1 bits (159), Expect = 2e-12
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = +2
Query: 95 PTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
P L L+K NF V+ +LVEF+APWCGHCK LAPEY KAA +L + D
Sbjct: 173 PPPVAALTLTKENFTEVVNRESLMLVEFFAPWCGHCKQLAPEYEKAAQELQKHD 226
Score = 47.6 bits (108), Expect = 3e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 259 PIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSP 363
P+ AK+DAT D+A+ + V GYPTLK FR G+P
Sbjct: 113 PVPFAKMDATVASDIAQRFDVSGYPTLKIFRKGTP 147
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +1
Query: 259 PIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG 357
PI LA VDAT E +LA+ Y V+GYPTLK FR G
Sbjct: 228 PIPLAIVDATIESELAQKYEVQGYPTLKVFRKG 260
Score = 33.5 bits (73), Expect = 0.054
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 23 DNIEMRVLIFTAIALLGLALGDEVP--TEENVLVLSKANFETVITTTEY-ILVEFYAPWC 193
D++ V F A L + VP +E V V+ F+ ++ + +L+EFYAPWC
Sbjct: 496 DSLREFVEEFKAGNLKPIIKSQPVPKSNKEPVTVVVGKTFDEIVNDPKKDVLIEFYAPWC 555
Query: 194 GHCKSLAPEYAK 229
G +L P + K
Sbjct: 556 G--IALEPTFKK 565
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 63.7 bits (148), Expect = 4e-11
Identities = 28/49 (57%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +2
Query: 101 EENVLVLSKANFET-VITTTEYILVEFYAPWCGHCKSLAPEYAKAATKL 244
+E+V+ L+ NFE V+ + + LVEF+APWCGHC+ LAPE+AKAAT+L
Sbjct: 78 KEDVVELTDTNFEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAATEL 126
Score = 32.7 bits (71), Expect = 0.094
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 253 RSPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG 357
+ +K+ +DAT A Y V+GYPT+K F G
Sbjct: 127 KGKVKVGALDATVHTVTASRYQVQGYPTIKVFAAG 161
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
+VL L +NF++ + + +LVEF+APWCGHCK LAPEY AA L + D
Sbjct: 539 DVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKND 588
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 110 VLVLSKANFETVITT-TEYILVEFYAPWCGHCKSLAPEYAKAATKLAE 250
V V+ NF+ ++ T+ +L+EFYAPWCGHCKSL P+Y + KL +
Sbjct: 864 VKVVVGENFKEIVNDPTKDVLIEFYAPWCGHCKSLEPKYNELGEKLQD 911
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 259 PIKLAKVDATQE-QDLAESYGVRGYPTLKFFRNG 357
P+ LAKVD T+ +D YGV GYPTLK FRNG
Sbjct: 590 PVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNG 623
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 313 YGVRGYPTLKFFRNGSP 363
+G+ +PTLK FR G P
Sbjct: 448 FGIHQWPTLKLFRYGQP 464
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
+VL L +NF++ + + +LVEF+APWCGHCK LAPEY AA L + D
Sbjct: 14 DVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKND 63
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +2
Query: 98 TEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEY 223
T+ V+ L+K NF+ V+ ++ LVEFYAPWCGHCK LAP Y
Sbjct: 20 TQGKVIDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTY 61
Score = 40.3 bits (90), Expect = 5e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 256 SPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS 360
S + +AKVDA ++DL + V+G+PT+K+F GS
Sbjct: 72 SDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGS 106
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 74 LALGDEVPTEENVLV-LSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKL 244
L D VP +E L+ L +NFE + +++LV+FYAPWC HCK +AP+Y A +L
Sbjct: 123 LMASDGVPDDEPTLLELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKEL 180
Score = 54.4 bits (125), Expect = 3e-08
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +2
Query: 95 PTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
P VL L+ NF I EY+LV+FYAPWC C+ L+P + AA +L + +
Sbjct: 48 PASPAVLNLNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNN 101
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 56.8 bits (131), Expect = 5e-09
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +2
Query: 86 DEVP---TEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
DE P T V+ L F+ + +LV FYAPWCGHCK++ PEY AA L E++
Sbjct: 73 DEKPWSDTPSEVVHLRDDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAAQTLKEQE 132
Query: 257 L 259
+
Sbjct: 133 I 133
Score = 53.2 bits (122), Expect = 6e-08
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +2
Query: 89 EVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAA 235
E+P+E V LS F++ + +++LV FYAPWCGHCK PE AA
Sbjct: 192 EIPSE--VYHLSDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKPELMSAA 238
Score = 33.1 bits (72), Expect = 0.071
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 164 ILVEFYAPWCGHCKSLAPEYAKAATKLAEE 253
+++ Y CG+CK PE+A AAT+ +E
Sbjct: 2 VVIVLYIAGCGYCKRFKPEFAAAATEHKDE 31
Score = 29.9 bits (64), Expect = 0.66
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 259 PIKLAKVDATQEQDLAESYGVRGYPT 336
P LA VDAT+E L + + V GYPT
Sbjct: 134 PGVLAAVDATKEAALGKRFKVEGYPT 159
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 250 RRSPIKLAKVDATQEQDLAESYGVRGY 330
RR I A VD T+E + + +GV GY
Sbjct: 264 RRRLIAYAAVDCTKEMAVCQQFGVEGY 290
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATK 241
NV L++ F+ + T + ILV FYAP C K A +Y +A K
Sbjct: 335 NVQHLTQDTFDEALKTFDSILVMFYAP-CMKGK-FAFDYERARAK 377
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 55.2 bits (127), Expect = 2e-08
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 101 EENVLV--LSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEE 253
E++ LV L ++F + TE++LV FYAPWCGHCK+ P+Y KAA ++
Sbjct: 144 EDSSLVKQLDGSDFWGYLNNTEHVLVMFYAPWCGHCKNAKPKYEKAAETFKDQ 196
Score = 54.0 bits (124), Expect = 4e-08
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +2
Query: 71 GLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAE 250
G D + V+ L+ + + I + E +LV ++APWCGHC + P Y KAA L +
Sbjct: 39 GYPTSDWSKDDSKVVFLTDESHDEFIKSHENVLVMYFAPWCGHCNEMKPNYYKAAQVLHD 98
Query: 251 EDLLSN 268
ED N
Sbjct: 99 EDANCN 104
Score = 32.7 bits (71), Expect = 0.094
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 268 LAKVDATQEQDLAESYGVRGYPTLKFFR 351
LA VD T+ +D+A+ + GYPT+K ++
Sbjct: 105 LAAVDCTKHKDVAKKVALAGYPTVKLYK 132
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 271 AKVDATQEQDLAESYGVRGYPTLKFFRNG 357
AK+D T+ D+ + V GYPTL+++ G
Sbjct: 202 AKLDCTKFGDVCDKEEVNGYPTLRYYLYG 230
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 53.6 bits (123), Expect = 5e-08
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +2
Query: 101 EENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEE 253
E + L+ +F+ + E +LV+FYAPWC C +L P+Y KAA LA+E
Sbjct: 21 ENPIFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYEKAARDLAKE 71
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 119 LSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEDL 259
L+ NF+ +I + +LV+FYAPWC HC+ L P+ AA LA + L
Sbjct: 25 LNAQNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANALAAKGL 71
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 43.6 bits (98), Expect = 5e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 116 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKL 244
V SK F V+ + + +V+FYAPWCG C AP+Y + A L
Sbjct: 438 VNSKNFFTDVLASEDAWVVDFYAPWCGPCMRFAPKYEQLAKML 480
Score = 42.7 bits (96), Expect = 9e-05
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 LALGDEVPTEENVLVLSKANFETVITT-TEYILVEFYAPWCGHCKSLAPEYAKAA 235
+AL + NV L +F + +T+ + V+F+APWC C L PEY KAA
Sbjct: 274 IALFAKESVSSNVHALGPEDFPSSVTSPSRPFFVDFFAPWCPPCMRLLPEYRKAA 328
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +2
Query: 125 KANFETVITTTE--YILVEFYAPWCGHCKSLAPEYAKAA 235
+A F +VI T+ ++++FYA WCG C+ + P++ K A
Sbjct: 18 RAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMA 56
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 98 TEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAA 235
+E V +L+K F+ I + V+FYAPWC HC LAP + + A
Sbjct: 88 SEAGVHILTKNTFDKHIELGLHF-VKFYAPWCIHCIKLAPIWERLA 132
Score = 32.7 bits (71), Expect = 0.094
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 262 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNG 357
+ +AKVD T + +L +R YPT+K + +G
Sbjct: 19 LTIAKVDCTSDVNLCVKQNIRAYPTMKLYYDG 50
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 107 NVLVLS-KANFETVITT--TEYILVEFYAPWCGHCKSLAPEYAKAATK 241
NV VL + F +T T+ ++ +F A WCG CKS+AP Y+ + K
Sbjct: 8 NVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEK 55
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 274 KVDATQEQDLAESYGVRGYPTLKFFRN 354
K+D Q+LA GV PT +FF+N
Sbjct: 63 KIDVDVCQELAAKQGVTAMPTFQFFKN 89
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 107 NVLVLSKANFETVITT---TEYILVEFYAPWCGHCKSLAPEYAKAATKLAE 250
NV+V+ +F +V + ++++F A WCG CKS+AP + + K +
Sbjct: 9 NVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMD 59
Score = 31.1 bits (67), Expect = 0.29
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 274 KVDATQEQDLAESYGVRGYPTLKFFRNGSPI 366
KVD Q Q AES G+R PT F+ N + I
Sbjct: 64 KVDVDQCQLTAESCGIRAMPTFHFYHNKAKI 94
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 35.9 bits (79), Expect = 0.010
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +2
Query: 104 ENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEED 256
+ ++ + N + + ++++ + FYAPW HC+ + + + A + A+ D
Sbjct: 26 KKIVEFTNENVDEYVDGSKFVFIFFYAPWDDHCQRILQIFDQVADEFADRD 76
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 34.3 bits (75), Expect = 0.031
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 137 ETVITTTEYILVEFYAPWCGHCKSLAP 217
+ VI + +L+ FY PWCG C + AP
Sbjct: 529 DIVINNDQDVLLVFYTPWCGMCINFAP 555
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 32.7 bits (71), Expect = 0.094
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 134 FETVITTTEYILVEFYAPWCGHCKSLAPEYAKAA-----TKLAEEDLLSN*RKLTQLKNR 298
F+ + E ++F A WCG C+ + P++ + A K A+ D+ N ++ ++ NR
Sbjct: 4 FDKFLKDNEVAAIDFTATWCGPCRMIGPKFEEMAKEFKGVKCAKVDVDVNSVEVLRVDNR 63
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 30.7 bits (66), Expect = 0.38
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 131 NFETVITTTEYIL--VEFYAPWCGHCKSLAPEYAKAATKLAEEDLLSN*RKLTQLKNRIS 304
+F+ +++++ +L V F+APW HC + + A + + + N + + ++ +
Sbjct: 11 DFDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIKNQKVVDRIDGANA 70
Query: 305 PRAT 316
P T
Sbjct: 71 PELT 74
>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
Length = 664
Score = 29.5 bits (63), Expect = 0.87
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 170 VEFYAPWCGHCKSLAPEYAKAATKL 244
V FYAPWCG + E+ AA+ L
Sbjct: 457 VFFYAPWCGQSRRAVEEFNIAASLL 481
>SB_13271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 29.5 bits (63), Expect = 0.87
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 107 NVLVLSKANFETVITTTEYILVEFYA 184
NV++L + NF+ VI + + V FYA
Sbjct: 12 NVVILDEGNFDKVIAENKLVFVNFYA 37
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 265 KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 366
KL V T+E D + V G P T+K+F++G P+
Sbjct: 1042 KLQPVQVTEEDDCKLTCKVSGLPEPTIKWFKDGEPV 1077
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 265 KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 366
KL + T+E + + V G P T+K+F++G P+
Sbjct: 1331 KLQPIQVTEEDECKLTCKVSGLPEPTIKWFKDGEPV 1366
>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
Length = 213
Score = 27.9 bits (59), Expect = 2.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 188 WCGHCKSLAPEYAKA 232
WCG CK+L P++A++
Sbjct: 8 WCGACKALRPKFAES 22
>SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)
Length = 257
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 158 EYILVEFYAPWCGHCKSLAPEYAKAAT 238
+YI+ +F CG CK+LAP ++ T
Sbjct: 123 KYIMKKFCQKECGLCKALAPPICQSTT 149
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 201 ANLWHRNTPRQQQSWLKKISYQTSES*RNSRTGSR 305
+N H++TPR ++ W K+ +E ++R SR
Sbjct: 91 SNAKHKDTPRPKEDWYKETQSSLAEELDDTRQRSR 125
>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 183 LHGAATAN--LWHRNTPRQQQSWLKKISYQTSES*RNSR 293
L+G ATA L+ Q+Q +LKKI +T E RNSR
Sbjct: 133 LNGMATAYDFLYPYMDSNQRQKYLKKIVNETRELYRNSR 171
>SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)
Length = 336
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 183 LHGAATAN--LWHRNTPRQQQSWLKKISYQTSES*RNSR 293
L+G ATA L+ Q+Q +LKKI +T E RNSR
Sbjct: 10 LNGMATAYDFLYPYMDSNQRQKYLKKIVNETRELYRNSR 48
>SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 110 VLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 217
+LV+ + ++ T LVE + P CG+ + LAP
Sbjct: 129 MLVIKPSALALILLTFATYLVEAFFPGCGNREDLAP 164
>SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 250 FSQLCCCLGVFRCQRFAVAAPWSIEFN*NVLRGCNYSFKVSFTQN 116
F LC G + W+ E + N + GC+Y VS Q+
Sbjct: 149 FIDLCSGFGFVVLPTVVICTSWNQESHMNNITGCSYQKPVSTNQS 193
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 313 YGVRGYPTLKFFRNGSP 363
+G+ +PTLK FR G P
Sbjct: 251 FGIHQWPTLKLFRYGQP 267
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 171 LNSMLHGAATANLWHRNTPRQQQSWLKKISYQTSES*RNSRTGSRRELRCT 323
+ S +G A ++ + R +W+ + SY+ SES N T +R +C+
Sbjct: 416 MGSTSNGQAPFDIHYPEIIRPNMTWMNQTSYKCSESFINPLT-NRTSAKCS 465
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,253
Number of Sequences: 59808
Number of extensions: 188276
Number of successful extensions: 456
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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