Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30215.Seq
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   132   2e-32
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   131   3e-32
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   4.4  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    24   7.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  132 bits (318), Expect = 2e-32
 Identities = 61/86 (70%), Positives = 72/86 (83%)
 Frame = +1

Query: 16  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 195
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 196 KDPKRLFEGNALLRRLVRIGYWMKNR 273
           KDPKRLFEGNA++RRLVR+G   ++R
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESR 90



 Score = 53.6 bits (123), Expect = 8e-09
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 255 VLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
           +LDE +MKLDYVL L+I DFLERRLQTQVF
Sbjct: 85  ILDESRMKLDYVLALRIEDFLERRLQTQVF 114


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  131 bits (317), Expect = 3e-32
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = +1

Query: 16  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 195
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 196 KDPKRLFEGNALLRRLVRIG 255
           KDPKRLFEGNA++RRLVR+G
Sbjct: 65  KDPKRLFEGNAIIRRLVRLG 84



 Score = 53.2 bits (122), Expect = 1e-08
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 255 VLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
           +LDE +MKLDYVL L+I DFLERRLQTQVF
Sbjct: 85  ILDETRMKLDYVLALRIEDFLERRLQTQVF 114


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 140 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 33
           LT H+  + +     +   +WS + F   R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 288 HNRVSSVFHPVPNTNQT 238
           HNR+S+  +P P  NQT
Sbjct: 689 HNRISARTNPYPINNQT 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,429
Number of Sequences: 5004
Number of extensions: 21278
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)