Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30215.Seq
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 115 1e-26
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 115 1e-26
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 113 3e-26
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 83 4e-17
07_03_1358 - 25984897-25984997,25985623-25985650 47 5e-06
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 1.7
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 3.0
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 3.0
03_04_0181 - 18192774-18192970,18193519-18193882 26 6.9
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 26 6.9
10_08_0989 + 22069244-22071679 26 9.1
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 26 9.1
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 26 9.1
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 26 9.1
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 115 bits (276), Expect = 1e-26
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLRR+ R G
Sbjct: 70 RRIFEGEALLRRMNRYG 86
Score = 39.5 bits (88), Expect = 7e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
Y +L + Q KLDYVL L + +FL RRLQT VF
Sbjct: 85 YGLLADGQNKLDYVLALTVENFLARRLQTLVF 116
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 115 bits (276), Expect = 1e-26
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLRR+ R G
Sbjct: 286 RRIFEGEALLRRMNRYG 302
Score = 39.5 bits (88), Expect = 7e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
Y +L + Q KLDYVL L + +FL RRLQT VF
Sbjct: 301 YGLLADGQNKLDYVLALTVENFLARRLQTLVF 332
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 113 bits (273), Expect = 3e-26
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1
Query: 31 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 210
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 211 LFEGNALLRRLVRIG 255
+FEG ALLRR+ R G
Sbjct: 95 IFEGEALLRRMNRYG 109
Score = 39.5 bits (88), Expect = 7e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
Y +L + Q KLDYVL L + +FL RRLQT VF
Sbjct: 108 YGLLADGQNKLDYVLALTVENFLARRLQTLVF 139
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 83.4 bits (197), Expect = 4e-17
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 205 KRLFEGNALLRRLVRIG 255
+R+FEG ALLR + R G
Sbjct: 59 RRIFEGEALLRHMNRYG 75
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
Y +L E Q KLDYVL L + +FL+ RLQT VF
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCRLQTIVF 105
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 5e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 25 FSKTYVTPRRPFEKARLDQELKIIGEYG 108
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 79 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 201
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 58 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 192
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 136 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 8
R I+H C + T R LG D DE S S K LC
Sbjct: 265 REIIHCCADETTKRIIEELGDDYYAILADECSDLSYKEQLALC 307
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 178 AHEQPYGYERACI*RAILHACCGDRTLR*SSTLGQDVPFQKDD 50
+H + + R R +H CG +LR S TLG PF + D
Sbjct: 70 SHHRHRNHPRVQRHRRAIHKTCGAISLRPSLTLGFMPPFLRRD 112
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = +1
Query: 55 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 198
P KA LD K IG+ L R RV YT K E L EEK
Sbjct: 709 PTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIKEEK 756
>10_08_0989 + 22069244-22071679
Length = 811
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 136 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 8
R I+H C + T R LG D DE S S K LC
Sbjct: 280 REIIHCCADETTKRIIEELGDDHYAILADECSDLSHKEQLALC 322
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 115 CGDRTLR*SSTLGQDVPFQKDDEVSRTSLKI 23
CGD T S + D+P Q+ V +SL++
Sbjct: 683 CGDATFTDSPSTAMDIPEQRFSPVGLSSLEV 713
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 138 DAPYFTLVAETVLSDDLQLLVKTC 67
D PYF+L A ++D ++LVK C
Sbjct: 1017 DTPYFSLDACCFINDIQEVLVKLC 1040
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 121 REVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGY 258
+ V ++Y +IR A EL DPK + + +L+ L Y
Sbjct: 593 KSVQAIRYQTPQIRSALLELEKASTDDPKAVSDAQSLVTALENFEY 638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,351,514
Number of Sequences: 37544
Number of extensions: 147618
Number of successful extensions: 280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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