Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30215.Seq
(344 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 1e-36
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.082
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 2.3
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05) 26 9.4
SB_13488| Best HMM Match : WSC (HMM E-Value=3.6) 26 9.4
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_12678| Best HMM Match : WSC (HMM E-Value=3.8) 26 9.4
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 26 9.4
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 26 9.4
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 148 bits (358), Expect = 1e-36
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +1
Query: 22 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 201
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64
Query: 202 PKRLFEGNALLRRLVRIGYWMKNR 273
P+RLFEGNALLRRLVRIG ++R
Sbjct: 65 PRRLFEGNALLRRLVRIGVLDESR 88
Score = 54.0 bits (124), Expect = 3e-08
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +3
Query: 255 VLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
VLDE + KLDYVLGL+I DFLERRLQTQVF
Sbjct: 83 VLDESRKKLDYVLGLRIEDFLERRLQTQVF 112
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.7 bits (71), Expect = 0.082
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 49 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 207
+RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 64 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 207
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 67 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAA 171
A +D+ELK I L+N+ V ++Y+ RKAA
Sbjct: 513 AEIDEELKTIKLLDLKNQTVVLPMQYSPRTTRKAA 547
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 126 FTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 31
FT++++ ++D ++ L+ CL T +RL
Sbjct: 1620 FTVISDKTVADTIEALIGACLMSSGTNAALRL 1651
>SB_56055| Best HMM Match : TSP_1 (HMM E-Value=6.5e-05)
Length = 374
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 13 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 132
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_13488| Best HMM Match : WSC (HMM E-Value=3.6)
Length = 97
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 13 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 132
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 16 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 60
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 126 SMARQIHARSYP*GCS*APHPRGEGPQEIVR 218
S RQIH P P +G GPQE VR
Sbjct: 249 SRRRQIHNGGIPGTSGSGPRAQGMGPQEGVR 279
>SB_12678| Best HMM Match : WSC (HMM E-Value=3.8)
Length = 117
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 13 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 132
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 13 VPSVFSKTYVTPRRP-----FEKARLDQELKIIGEYGLRNKREVW 132
+P+ F K + P FEK R++ E +GL+N +E W
Sbjct: 36 MPNFFKKIEYDKKNPNFQDMFEKCRVEAEKLGYTYFGLQNMKECW 80
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 25.8 bits (54), Expect = 9.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 61 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 240
EK+RL+ EL R ++E W + + + K REL T E + E N L+
Sbjct: 1841 EKSRLESEL------AARVRQEAWGKQEQIYTLEKEVRELKTSNEGYIRSNDEKNVLISE 1894
Query: 241 L 243
L
Sbjct: 1895 L 1895
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,805,713
Number of Sequences: 59808
Number of extensions: 169742
Number of successful extensions: 454
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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