Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30215.Seq
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   139   6e-34
U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical p...    27   4.8  
AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    27   4.8  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  139 bits (336), Expect = 6e-34
 Identities = 65/82 (79%), Positives = 75/82 (91%)
 Frame = +1

Query: 10  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 189
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 190 EEKDPKRLFEGNALLRRLVRIG 255
           E+KDPKRLFEGNALLRRLV+IG
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIG 84



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 255 VLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
           VLDE +MKLDYVLGLK+ DFLERRLQTQVF
Sbjct: 85  VLDETKMKLDYVLGLKVEDFLERRLQTQVF 114


>U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical
           protein F08F3.1 protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 13  VPSVFSKTYVTPRRPFEKARLDQELKI 93
           VP   ++T VTP RP EK +  ++++I
Sbjct: 74  VPVFHNETTVTPERPIEKKKRVRQIQI 100


>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 121 ACCGDRTLR*SSTLGQDVPFQKDDE-VSRT 35
           A C DR L  + TLG D+P    +E +SRT
Sbjct: 371 AACPDRHLISAQTLGADIPNNASNEYISRT 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,095,765
Number of Sequences: 27780
Number of extensions: 123251
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)