Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30213.Seq
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58396| Best HMM Match : Acetyltransf_1 (HMM E-Value=0.0096)         28   7.2  
SB_27772| Best HMM Match : Ank (HMM E-Value=0.98)                      28   9.5  

>SB_58396| Best HMM Match : Acetyltransf_1 (HMM E-Value=0.0096)
          Length = 236

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 143 FNYQKKMESKYFMQTLNLTVKIYRGVKGYHSLNFEKNTQQKTFNC 277
           F   +  ESKY  Q L   V ++   +GYH L F  +       C
Sbjct: 159 FGVLRSHESKYINQLLLSEVVMFAEDQGYHKLIFYSSNNSSLLTC 203


>SB_27772| Best HMM Match : Ank (HMM E-Value=0.98)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -1

Query: 323 NSMFLIELQLSLHRSNS*KFFVVYFFQSLNYDSLSPLYIF*RLSSMSA*NIYSPFSFDN 147
           +S     L+++ +R+ +   ++ YFF  +N D+L P++    L+      +Y  F F+N
Sbjct: 173 SSELSFNLRVNAYRALANPLYISYFF-IMNPDALHPIFHVLELNKKLKNQMYRDFEFNN 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,029,183
Number of Sequences: 59808
Number of extensions: 478238
Number of successful extensions: 1072
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)