Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30213.Seq
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF106582-2|AAC78213.1|  457|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    29   3.6  
AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL032626-11|CAC44300.1|  140|Caenorhabditis elegans Hypothetical...    29   4.8  
AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical...    29   4.8  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    28   6.4  
AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    28   6.4  

>Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical
           protein C38D4.1b protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 92  THCPSCAYTINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 130


>Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical
           protein C38D4.1a protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 92  THCPSCAYTINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 130


>AF106582-2|AAC78213.1|  457|Caenorhabditis elegans Hypothetical
           protein W05F2.2 protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 92  THCPSCAYTINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 130


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 101 FEWVSKRDAPAALFFNYQKKMESKYFMQTLNLTVKI--YRGVKGYHSLN---FEKNTQQK 265
           F W    +     +FN++    +   M  ++L++ I  Y GVKGY S+N    + N+ QK
Sbjct: 183 FFWPKYNNFTTDQYFNWRTAGGAMIVMGLISLSIAIMVYFGVKGYRSMNKLIAQSNSSQK 242


>AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical
           protein W03G9.3 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 92  THCPSCAYTINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 130


>AL032626-11|CAC44300.1|  140|Caenorhabditis elegans Hypothetical
           protein Y37D8A.12b protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 88  THCPSCAYMINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 126


>AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical
           protein Y37D8A.12a protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 681 SHIPSCKTAVSVDPSDTDKPVTYNTITTHSTVMTFLYYYI 562
           +H PSC   ++V   DT K + Y  +        FLY+Y+
Sbjct: 88  THCPSCAYMINVH-KDTPKYIGYGILIAFVIFHIFLYFYL 126


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 146 NYQKKMESKYFMQTLNLTVKIY--RGVKGYHSLNFEKNTQQ 262
           N+ K  +    M +  L  KIY  +   GYHSLNF+++  Q
Sbjct: 170 NFNKLRQYICIMNSQALKCKIYEHKEENGYHSLNFDESDHQ 210


>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 477 GISIGCYCSVDRRSACCGS*LVYTQTY-LENVLS 379
           GISI CYC+    +AC  S ++    Y L+N ++
Sbjct: 87  GISINCYCAKSFFAACLSSTIIAESIYQLKNTIN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,504,216
Number of Sequences: 27780
Number of extensions: 378092
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)