Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30213.Seq
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 633 TDKPVTYNTITTHSTVMTFLYYYIYIRMEHTEG 535
           +DK     T+   +  + FL+  ++  ME+TEG
Sbjct: 285 SDKLSKIQTLKLATRYIDFLFQVLHCNMENTEG 317


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 754 PNYPHSPPRPKAPMEPN 704
           PNY   PP    P+ PN
Sbjct: 208 PNYTACPPTLACPLNPN 224


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 485 FYLVLASGVIAR*TDGPHV 429
           F+LV  +G I    D PH+
Sbjct: 486 FFLVTTAGTIGILMDAPHI 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,426
Number of Sequences: 438
Number of extensions: 5030
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)