Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30212.Seq
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  31   1.0  
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 30   2.3  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  29   3.1  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)                    28   9.5  
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNN 657
           +  VAAGRAH+  LT    VYT G+N
Sbjct: 231 VSQVAAGRAHSAFLTKDGCVYTCGSN 256


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 472 QYRFPNWIPFTTRNHPLELLL---SYAPIYIPYKSLECEIKAVAAGR 603
           + +F NWIP+     PLELL    SY P+  P    E E + + A R
Sbjct: 407 EIQFENWIPYFCFVLPLELLQHYPSYRPVLTPATKPEEEPQQITAYR 453


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           SL   I  VA G AHT++LT    V+  G+N
Sbjct: 33  SLPHGISKVALGTAHTVLLTFNHEVFAFGDN 63


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 407 GYGFTVASIKTSEQHKVFGT-GINTDSQIGYHSPREIILWNFCLAMHLFI 553
           GYG  +        + V G  G+N +  +  H   E++L + CLA  +F+
Sbjct: 548 GYGLGIVQSARQFANLVAGLQGVNLEGMLLNHCKEELLLGDNCLARSIFV 597


>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
          Length = 350

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNGIWSV 672
           I   + GR HT+ILTD   V+  G+N +  +
Sbjct: 30  IVQASCGRGHTLILTDAGLVFGFGDNKLGQI 60


>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 210 PIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKV 326
           PI + P S+S++RRV       +V W+S++   R+ ++V
Sbjct: 151 PILKSPRSQSSERRVHFSARSPKVFWISSTLNRRRQRRV 189


>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 532 LSYAPIYIPYKSLECEIKAVAAGRAHTIILTDK 630
           L Y P+++P   + CE       RA++I LTD+
Sbjct: 57  LGYPPMHVPAWQITCETLRSRDERAYSIQLTDR 89


>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 310 LATWEVDTQSTCLSKSPHMTRLS 242
           + TW VD  S C S SPH   L+
Sbjct: 88  IRTWNVDVNSLCCSWSPHAVWLA 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,057,175
Number of Sequences: 59808
Number of extensions: 486610
Number of successful extensions: 1184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)