Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.3  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   5.4  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   7.1  

>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 240 QVVNQIELERGKEKIIFLYSTTTSITLVAAPTPSNKYYNSTSTKPVPVE 386
           + +N++EL+R +E++ +      +++L  +   SNK  N  STK  P++
Sbjct: 155 EAMNELELKREEEELQY----ALALSLSESTAQSNKVENPQSTKDEPLQ 199


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 TSITLVAAPTPSNKYYNSTSTKPVPVES 389
           TS+  ++ P  SNK+ N   T P+ V S
Sbjct: 389 TSVLSLSVPNASNKHENGDLTSPLGVPS 416


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 210 LLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKV 109
           LLTP N  N  LL      G + T +F  +L K+
Sbjct: 302 LLTPFNVDNRQLLMFQAAGGYIPTENFDQFLNKL 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,710
Number of Sequences: 5004
Number of extensions: 36927
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)