Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    29   2.4  
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787...    28   5.4  
12_01_0686 - 5855216-5858263                                           27   7.2  
11_02_0095 + 8252680-8253008,8253460-8253527,8254575-8254720,825...    27   7.2  
05_01_0096 + 654074-654499,654673-655326                               27   7.2  

>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 374 GAGREPRCPRGMTAATSSTG 433
           G GR+ RCP G+ AA S +G
Sbjct: 824 GGGRKERCPTGLPAACSGSG 843


>10_07_0110 +
           12977702-12977958,12978374-12978527,12978661-12978798,
           12978903-12979133,12979228-12979371,12979516-12979606,
           12979798-12979868,12980014-12980128,12980313-12980431,
           12980539-12980604,12980701-12980829,12980919-12981062,
           12981522-12981704
          Length = 613

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 411 VIPRGHRGSRPAPVLLTLSYS 349
           +IP GHR  +PAP+   L+YS
Sbjct: 536 LIPSGHRIGKPAPLFKGLNYS 556


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 207  LTPLNFINLVLLQLNIMVGKL-LTHSFTSYLMKVLISSINYYTPTLQNVC 61
            L  LNF++ + L  N++VG++  ++ F+++     + +I    P L   C
Sbjct: 917  LASLNFLSTLNLSYNMLVGRIPNSYQFSTFSNNSFLGNIGLCGPPLSKQC 966


>11_02_0095 +
           8252680-8253008,8253460-8253527,8254575-8254720,
           8254829-8254915,8254964-8255071,8255532-8255585,
           8255668-8255904
          Length = 342

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 386 EPRCPRGMTAATSSTGSIETFHHYNSSKTKETTLIFRKPTKERIPSVH 529
           EPR     TA  S   SI+ F   + SKTK     F +P K+ I  +H
Sbjct: 142 EPRGKTMGTAIDSEPTSIDLFKELHCSKTK----CFSEPVKKAIEDMH 185


>05_01_0096 + 654074-654499,654673-655326
          Length = 359

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 GAGREPRCPRGMTAATSSTGSIETFHHYNSSKTKETT 484
           GAGR  RC  G   A SS+    +   Y+SSK   T+
Sbjct: 245 GAGRHRRCFHGQITACSSSIPDASIVLYDSSKVNATS 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,323,609
Number of Sequences: 37544
Number of extensions: 238995
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)