Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 297 STTTSITLVAAPTPSNKYYNSTSTKPVP 380
           +TTT+ T     T  N   N+++T P P
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATTPPP 691


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 439 DRTGRGRGRRH 407
           DR GRGR R H
Sbjct: 317 DRRGRGRSREH 327


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 439 DRTGRGRGRRH 407
           + TGRG+GR H
Sbjct: 76  EETGRGKGRGH 86


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 300 TTTSITLVAAPTPSNKYYNSTSTKPVPV 383
           T  SI +  + T SNK YN   T  + V
Sbjct: 71  TGESIVVAPSQTLSNKEYNMLRTTAINV 98


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 309 SITLVAAPTPSNKYYNSTSTKPVP 380
           S+TLV A TP +    ST+    P
Sbjct: 29  SLTLVKAETPEHLAGTSTTAAATP 52


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 355 TQRQQNRCRSRAAVSARDDGG 417
           T R  N  RSR A   RDDGG
Sbjct: 18  TSRGDND-RSRIARLGRDDGG 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,623
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)