Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30202.Seq
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   1e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          112   3e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   2e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.20 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.47 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.62 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.5  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (273), Expect = 1e-25
 Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 437
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 438 TREHALLAFTLGVKQLIVGVNKMD--PLNHHTVSP 536
           TREHA+L  +LGV QLIV +NK+D   L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  112 bits (270), Expect = 3e-25
 Identities = 50/114 (43%), Positives = 74/114 (64%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 435 QTREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPSYIKKIGYNP 596
           QTREHA+LA T GVK L++ VNKMD            + + K   ++KK+G+NP
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 29/42 (69%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREVG 252
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAEREVGI 255
           MGKGSFKYAWVLDKLKAERE GI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGI 23


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 479
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 480 QLIVGVNKMD 509
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 488
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 489 VGVNKMD 509
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 24/91 (26%), Positives = 35/91 (38%)
 Frame = +3

Query: 246 GRYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 425
           G  T  I  +  +     +  +D PGH  F      G    D  +++VAA          
Sbjct: 122 GGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP---- 177

Query: 426 KNGQTREHALLAFTLGVKQLIVGVNKMDPLN 518
              QT+E    A   GV  +I  +NK+D  N
Sbjct: 178 ---QTKEAISHAQAAGV-PIIFAINKIDKPN 204


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 247  VGI 255
             GI
Sbjct: 1987 RGI 1989


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = -1

Query: 735 PMRPFSRSALPSLTLHLPSXEPXHFG*RLQHVVSVPIQKWARKRQQLGCSQSS*CMKDTS 556
           P   FS + +P   +  P+    HFG   +   S PI K     +   CS+ + C    +
Sbjct: 105 PRARFSAAPMPPAPMMRPAMSYPHFGHPTRAGRSDPICKDFLNNK---CSRGNLCKFRHA 161

Query: 555 FLISSNLGSLYGGSVDPF 502
           F      G  YGG +D F
Sbjct: 162 FEDDKGYGGGYGGPMDDF 179


>SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 476 QTAHRRSKQNGSTEPPY-SEPRFEEIKKEVSFIHQE--DWLQP 595
           + AHR + QN  TEPPY + P+ +  K      H +  ++LQP
Sbjct: 63  EPAHRTTTQNHHTEPPYRTTPQNQHTKTTPQNQHTKTIEFLQP 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,759,608
Number of Sequences: 59808
Number of extensions: 557349
Number of successful extensions: 1737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)