Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30201.Seq
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    97   2e-21
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    41   2e-04
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.46 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   5.7  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.5  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   7.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 45/100 (45%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREVQE 434
           H+KC+ F+RPT   + LL  ELRDPKY  Y +YF+NV+ K+ ++ LAE D+ EAV+ +QE
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122

Query: 435 VFADYLAVDRHLFSFNIVGCLQGRVGT--NSIFQRVSQGL 548
            F DYL V+  L SFNI   ++       +  F R  QG+
Sbjct: 123 FFLDYLVVNNDLASFNIPHIIEDSPDNWQDGAFHRTHQGI 162



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/51 (29%), Positives = 33/51 (64%)
 Frame = +1

Query: 61  MNVIQAVKMYITXMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
           M+++ A + Y   +       +K++L++++TT IVS   +QS +L++++YL
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYL 50


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +3

Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAE----CDEXEAVREVQE 434
           I F++PT ENI L+  +L    Y   ++ FS+ +S+A ++  AE     +    + +V +
Sbjct: 92  IYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYD 151

Query: 435 VFADYLAVDRHLFSFNI 485
            + +Y+ ++   FS  +
Sbjct: 152 QYLNYVVLESDFFSLQL 168


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 280 RIKTMHFMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++ +H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMKCIVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 AECDEXEAVREVQEVFADYLAVDRHLFSFNIVGCLQGRVGTNSIFQRVSQ 542
           +E  E + V    E   DY  +D+HL      GC +  +G  S+++ V++
Sbjct: 205 SEQSETKCVGITIETRPDY-CLDQHLDEMLRYGCTRLEIGVQSVYEDVAR 253


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 GXERPWNESDING*RNYQHSEYGVQSIGNL 194
           G E+   ESD+N    + H  YG+ + G +
Sbjct: 247 GLEKELTESDVNIDTRFAHPAYGIPNEGTI 276


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -1

Query: 659  SSRIADPSXRETEXQVXDAAS*RTPGSPLAEY-RRSAXQTLRNSLEDAVGSNPTLEASXN 483
            S + + PS   T  Q+ D    R     L  Y  RSA ++L +  ++++ S   ++   N
Sbjct: 787  SRQSSQPSTVSTILQIPDKKFHRPFPRHLHRYVGRSASESLTSEKDESIKSMKGIDDFAN 846

Query: 482  IEREQVSVHSQVVSKN 435
            +E     + S VV K+
Sbjct: 847  LEIPGKGIESNVVIKD 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,671
Number of Sequences: 5004
Number of extensions: 50094
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)