Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30201.Seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    80   2e-15
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    36   0.039
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    29   2.6  
04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834     28   5.9  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    28   5.9  
09_02_0249 + 6240237-6240287,6241489-6241764                           28   7.8  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/77 (42%), Positives = 53/77 (68%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREVQE 434
           H+K + F+RP+S+N+  L R L  P++  Y ++FSNV+    I+ LA+ DE E V++VQE
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125

Query: 435 VFADYLAVDRHLFSFNI 485
            +AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/57 (45%), Positives = 41/57 (71%)
 Frame = +1

Query: 61  MNVIQAVKMYITXMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M +I  ++ YI  M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +3

Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDEXEA-VREV 428
           M  I FI+PT ENI +   ++  + P Y   +++FS+ V +  +  + +     A +  +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531

Query: 429 QEVFADYLAVDRHLFS 476
            E+  +Y A+D   F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +2

Query: 497 PRSGWNQQHLPT--SFSRSAGRSSCTLQAASLAFATXQHQXPGAP 625
           PRS W   H P+  SFS SA  S CT   A    +      P  P
Sbjct: 29  PRSAWFMLHAPSRRSFSTSASSSPCTSPPAPPETSPPNTSTPAPP 73


>04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834
          Length = 153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 490 DASKVGLEPTASSNEFLKVCXALLLYSASGEPGVRYXAA 606
           +A +  LEPTA S E +    A L Y A    GVR  AA
Sbjct: 4   EAVRRSLEPTALSKEVVGPASASLRYDAFALTGVRIDAA 42


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 535 TRWKMLLVPTRPWRHPTILKENR 467
           T+WK+ L     W H T++K NR
Sbjct: 453 TKWKVNLKKVASWHHDTLIKINR 475


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,025
Number of Sequences: 37544
Number of extensions: 311999
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)