Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30201.Seq
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical pr... 93 2e-19
U41030-5|AAM51527.1| 132|Caenorhabditis elegans Hypothetical pr... 71 8e-13
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.3
Z77134-1|CAB00871.1| 293|Caenorhabditis elegans Hypothetical pr... 29 4.0
U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine rece... 29 4.0
AL132841-6|CAB60331.2| 494|Caenorhabditis elegans Hypothetical ... 29 4.0
AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical ... 28 5.3
AF022972-2|AAC48242.1| 346|Caenorhabditis elegans Seven tm rece... 27 9.2
>U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical
protein C44C1.4a protein.
Length = 547
Score = 93.1 bits (221), Expect = 2e-19
Identities = 37/78 (47%), Positives = 60/78 (76%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREVQ 431
+++KC+VF+RPT +NI L +EL++P++ Y++YF+N ++K D+K LAE D+ E VREVQ
Sbjct: 65 KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQ 124
Query: 432 EVFADYLAVDRHLFSFNI 485
EVF D + + + LF+ N+
Sbjct: 125 EVFLDGVPIRKDLFTLNL 142
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/64 (42%), Positives = 45/64 (70%)
Frame = +1
Query: 61 MNVIQAVKMYITXMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
M+++Q+ + I M +G MK++LMD ETT VS ++QSE++QKEVY+F+RI++
Sbjct: 1 MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60
Query: 241 WDNM 252
+N+
Sbjct: 61 SENI 64
>U41030-5|AAM51527.1| 132|Caenorhabditis elegans Hypothetical
protein C44C1.4b protein.
Length = 132
Score = 70.9 bits (166), Expect = 8e-13
Identities = 26/59 (44%), Positives = 46/59 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXEAVREV 428
+++KC+VF+RPT +NI L +EL++P++ Y++YF+N ++K D+K LAE D+ E + +V
Sbjct: 65 KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/64 (42%), Positives = 45/64 (70%)
Frame = +1
Query: 61 MNVIQAVKMYITXMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
M+++Q+ + I M +G MK++LMD ETT VS ++QSE++QKEVY+F+RI++
Sbjct: 1 MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60
Query: 241 WDNM 252
+N+
Sbjct: 61 SENI 64
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -1
Query: 671 PSLPSSRIADPSXRETEXQVXDAAS*RTPGSPLAEYRRSAXQTLRNSLEDAVGSNPTLEA 492
P +P++ + T DA + TP +P + R + + +R + GS P E
Sbjct: 472 PEVPATATTKEAPPSTSSSPPDAPA--TPATPASSDSRDSPRKIRAMIFSLTGSPPESET 529
Query: 491 SXNIEREQV 465
+++EQV
Sbjct: 530 PPVLQQEQV 538
>Z77134-1|CAB00871.1| 293|Caenorhabditis elegans Hypothetical
protein R09H10.2 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 388 VLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGRIKTMHFMCSCYPIWHDCLSSRI 212
V +AL +LL YI S+S+ R FSD K S Y WHDCL I
Sbjct: 8 VFFAALSISLLLYI-------SVSNTPTPRFNFSDSAVSKVW----SNYTAWHDCLMQNI 56
Query: 211 SKL 203
SKL
Sbjct: 57 SKL 59
>U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 25 protein.
Length = 343
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 340 TPYLGSLSSRDNRAMFSDVGRIKTMHFMCSCYPIWH 233
TPYL + +FS + + F C YPIWH
Sbjct: 108 TPYLFGFNYFQFAKIFS-ISLLSANRFTCVAYPIWH 142
>AL132841-6|CAB60331.2| 494|Caenorhabditis elegans Hypothetical
protein Y15E3A.3 protein.
Length = 494
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 420 REVQEVFADYLAVDRHLFSFNIVGCLQGRVGTNSIFQRVSQGLXGAPPVLCKRRAWRSLR 599
REV E D+ A ++ FSF IVG L+ + +SI ++V + A + R A ++ +
Sbjct: 389 REVFETQEDWSATNKVSFSFYIVGILEEEI--DSIIEKVEEMNSEARDMSLDRSAMQATK 446
Query: 600 XSIXNL 617
+ L
Sbjct: 447 VILTEL 452
>AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical
protein Y43F4B.5a protein.
Length = 595
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 439 LLTTWLWTDTCSLSILXDASKVGLEPTASSNEFLK 543
L+T W+WT+ + DASKV + +A S++ +K
Sbjct: 337 LITWWIWTNWRKANPNADASKVYILNSAVSSQIVK 371
>AF022972-2|AAC48242.1| 346|Caenorhabditis elegans Seven tm
receptor protein 112 protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 342 YFIYFSNVVSKADI----KTLAECDEXEAVREVQEVFADYLAVDRHLFSFNIVGC 494
YF+Y ++A + KT E + E V + V+ Y +RH++ N++GC
Sbjct: 151 YFLYPDTEYTEAAVTYVLKTHYEVIKKENVSYIAYVYYQYENGERHIYIKNLLGC 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,186
Number of Sequences: 27780
Number of extensions: 283749
Number of successful extensions: 594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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