Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30200.Seq
(809 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 175 8e-43
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 154 2e-36
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 122 1e-26
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 120 3e-26
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 117 4e-25
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 116 9e-25
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 116 9e-25
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 115 2e-24
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 114 2e-24
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 114 2e-24
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 113 4e-24
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 113 4e-24
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 113 4e-24
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 112 9e-24
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 110 5e-23
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 106 8e-22
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 94 4e-18
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 93 6e-18
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 93 8e-18
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 77 7e-13
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 71 3e-11
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 69 1e-10
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 67 6e-10
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 65 2e-09
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 62 1e-08
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 56 1e-06
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 51 3e-05
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 51 4e-05
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 50 9e-05
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 49 2e-04
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 48 2e-04
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 48 2e-04
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 48 2e-04
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 48 4e-04
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 46 9e-04
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 46 0.001
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.008
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 43 0.008
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 43 0.011
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 43 0.011
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 42 0.014
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 41 0.032
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.042
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 41 0.042
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 40 0.056
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 40 0.074
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 40 0.098
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 40 0.098
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 39 0.17
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 38 0.23
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 38 0.23
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 37 0.52
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 37 0.69
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 37 0.69
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 37 0.69
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 37 0.69
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 37 0.69
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 36 1.2
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 36 1.2
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 36 1.2
UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protei... 36 1.2
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 36 1.6
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 36 1.6
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 36 1.6
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 35 2.1
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 35 2.8
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 35 2.8
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 34 3.7
UniRef50_Q38CH1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 34 3.7
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 34 3.7
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 4.9
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 34 4.9
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 34 4.9
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 34 4.9
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 33 6.4
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 33 6.4
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 33 6.4
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 33 8.5
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 33 8.5
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 33 8.5
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 33 8.5
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 33 8.5
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 33 8.5
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 175 bits (427), Expect = 8e-43
Identities = 97/162 (59%), Positives = 105/162 (64%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV
Sbjct: 53 FINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 112
Query: 421 KGSPYAADKRRGYHRQYFPRQXXXXXXXXVHAEED*DVVDPRPTKGVHKEMXVKKEALYH 600
KGSPYAADKRRGYHRQYFPRQ P P +G + ++ +
Sbjct: 113 KGSPYAADKRRGYHRQYFPRQGGGRGGEGAPRRGGLGRRGPPPNQGGAQGDEGQEGGIVP 172
Query: 601 LSAVFSVAIFAVDRRGGSPGPIE*RKVPPNCVPRNFPXRGQG 726
F F RRGG PGP+ R PRNF GQG
Sbjct: 173 SQRSFFRRNFRGGRRGGGPGPMN-RGGFRRVRPRNFQP-GQG 212
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIAEKVSGTVKWFNVKSGYGFINR
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINR 56
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 154 bits (374), Expect = 2e-36
Identities = 71/80 (88%), Positives = 75/80 (93%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPV
Sbjct: 44 FINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPV 103
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGSPYAADKRRGY+RQY+PR
Sbjct: 104 KGSPYAADKRRGYYRQYYPR 123
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIAEKVSGTVKWFNVKSGYGFINR
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINR 47
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 122 bits (294), Expect = 1e-26
Identities = 56/72 (77%), Positives = 63/72 (87%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++D K+D+FVHQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPV
Sbjct: 45 FINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPV 104
Query: 421 KGSPYAADKRRG 456
KGSPYAADKRRG
Sbjct: 105 KGSPYAADKRRG 116
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
+IA KV+GTVKWFNVKSGYGFINR
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINR 48
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 120 bits (290), Expect = 3e-26
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F + DT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV
Sbjct: 25 FINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPV 84
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YAA+KRRG+ + R
Sbjct: 85 KGSQYAAEKRRGFRHWWQKR 104
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV+G VKWFNVKSGYGFINR
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINR 28
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 117 bits (281), Expect = 4e-25
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 106 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 165
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 166 EGSRYAADRRR-YRRGYYGRR 185
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINR 109
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 116 bits (278), Expect = 9e-25
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV
Sbjct: 103 FINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPV 162
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R YF R+
Sbjct: 163 EGSRYAADRRR-YRRGYFGRR 182
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINR 106
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 116 bits (278), Expect = 9e-25
Identities = 56/81 (69%), Positives = 65/81 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV
Sbjct: 8 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPV 67
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD+RR Y R Y+ R+
Sbjct: 68 EGSRYAADRRR-YRRGYYGRR 87
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 115 bits (276), Expect = 2e-24
Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEP 417
F +DD KEDVF+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEP
Sbjct: 41 FVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEP 100
Query: 418 VKGSPYAADKRRGYHRQYFPR 480
VKGS YAAD+RR Y +Y PR
Sbjct: 101 VKGSKYAADRRR-YKPRYKPR 120
Score = 42.7 bits (96), Expect = 0.011
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A SG VKWFNV++GYGF+NR
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNR 44
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 114 bits (275), Expect = 2e-24
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PV
Sbjct: 36 FINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPV 95
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA +KRR + R+++PR
Sbjct: 96 KGSRYAPNKRR-FRRRFYPR 114
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA V GTVKWFNV++GYGFINR
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINR 39
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 114 bits (275), Expect = 2e-24
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV
Sbjct: 74 FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPV 133
Query: 421 KGSPYAADKRRGYHRQYFPRQ 483
+GS YAAD R ++R+Y PR+
Sbjct: 134 QGSKYAAD--RNHYRRY-PRR 151
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV GTVKWFNV++GYGFINR
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINR 77
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 113 bits (273), Expect = 4e-24
Identities = 54/80 (67%), Positives = 64/80 (80%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PV
Sbjct: 18 FINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPV 77
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA +KRR + R++FP+
Sbjct: 78 KGSRYAPNKRR-FRRRFFPQ 96
Score = 41.9 bits (94), Expect = 0.018
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 197 VSGTVKWFNVKSGYGFINR 253
V GTVKWFNV++GYGFINR
Sbjct: 3 VQGTVKWFNVRNGYGFINR 21
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 113 bits (273), Expect = 4e-24
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F +DDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V
Sbjct: 48 FINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNV 107
Query: 421 KGSPYAADKRRGYHRQYFPR 480
+GS YAAD+RR ++PR
Sbjct: 108 QGSKYAADRRRFRRGGWYPR 127
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
+IA +VSGTVKWFNVKSGYGFINR
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINR 51
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 113 bits (273), Expect = 4e-24
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DTKEDVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PV
Sbjct: 109 FINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPV 168
Query: 421 KGSPYAADKRRGYHRQYFPR 480
KGS YA ++R+ R++ PR
Sbjct: 169 KGSRYAPNRRKS--RRFIPR 186
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A +V GTVKWFNV++GYGFINR
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINR 112
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 112 bits (270), Expect = 9e-24
Identities = 54/73 (73%), Positives = 62/73 (84%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV
Sbjct: 78 FINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPV 136
Query: 421 KGSPYAADKRRGY 459
+GS +AADKRR +
Sbjct: 137 RGSQFAADKRRNF 149
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRK 268
VIA KV+GTVKWFNVKSGYGFINR R+
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTRE 86
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 110 bits (264), Expect = 5e-23
Identities = 57/82 (69%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F +DDTKEDVFVHQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV
Sbjct: 39 FINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPV 98
Query: 421 KGSPYAADKRRGYHR-QYFPRQ 483
GS YAADKRR R +Y+ R+
Sbjct: 99 VGSKYAADKRRYRGRPRYYRRR 120
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KVSGTVKWFNVK+GYGFINR
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINR 42
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 106 bits (254), Expect = 8e-22
Identities = 53/72 (73%), Positives = 57/72 (79%)
Frame = +1
Query: 268 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 447
D+FV Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADK
Sbjct: 93 DIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADK 152
Query: 448 RRGYHRQYFPRQ 483
RRGY RQY+ R+
Sbjct: 153 RRGY-RQYYNRR 163
Score = 51.2 bits (117), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
+IA KV+GTVKWFNVKSGYGFINR
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINR 87
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 93.9 bits (223), Expect = 4e-18
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F + DT ED+FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV
Sbjct: 36 FINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPV 95
Query: 421 KGSPYAADK 447
+GS YAAD+
Sbjct: 96 QGSKYAADR 104
Score = 46.8 bits (106), Expect = 6e-04
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V A KV GTVKWFNVK+GYGFINR
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINR 39
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 93.5 bits (222), Expect = 6e-18
Identities = 46/65 (70%), Positives = 50/65 (76%)
Frame = +1
Query: 286 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 465
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++RR R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 466 QYFPR 480
Y PR
Sbjct: 130 FYRPR 134
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 93.1 bits (221), Expect = 8e-18
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = +1
Query: 250 QDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
++DTKEDVFVHQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S
Sbjct: 49 RNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDS 108
Query: 430 PYAADKRRGYHR 465
Y AD+ H+
Sbjct: 109 KYTADRNHCKHQ 120
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 76.6 bits (180), Expect = 7e-13
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +1
Query: 250 QDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
++ + DVFVHQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS
Sbjct: 47 KNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGS 104
Query: 430 PYAA 441
YAA
Sbjct: 105 QYAA 108
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +1
Query: 250 QDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
++D +ED+F+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS
Sbjct: 47 RNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGS 106
Query: 430 PYAADKRRGYHR 465
YA RG R
Sbjct: 107 EYALRYPRGRGR 118
Score = 35.9 bits (79), Expect = 1.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 197 VSGTVKWFNVKSGYGFINR 253
++G VKWFNVK GYGF+ R
Sbjct: 29 ITGKVKWFNVKRGYGFVCR 47
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/66 (54%), Positives = 44/66 (66%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F +DD EDVFVHQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V
Sbjct: 18 FIHRDDVDEDVFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAV 76
Query: 421 KGSPYA 438
GS +A
Sbjct: 77 LGSKFA 82
Score = 35.5 bits (78), Expect = 1.6
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINR 253
G VKW+NVK GYGFI+R
Sbjct: 5 GKVKWYNVKKGYGFIHR 21
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 66.9 bits (156), Expect = 6e-10
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F + DT ED+FVH++ I + N +S+GDGE VEF ++A + VTGPG +PV
Sbjct: 49 FITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPV 101
Query: 421 KGSPYAADKRRGYHR 465
KGSP+ A +RG HR
Sbjct: 102 KGSPFVA--KRGGHR 114
Score = 38.7 bits (86), Expect = 0.17
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFINR 253
+++++GTVKWFN K G+GFI R
Sbjct: 31 SKRITGTVKWFNAKDGFGFITR 52
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEP 417
F ++D ++D+FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+
Sbjct: 81 FISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDN 140
Query: 418 VKGSPYAADKRRGYHRQYFPR 480
V GS Y + + PR
Sbjct: 141 VIGSRYRHKLLSRFRKNRKPR 161
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 432
D ED FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS
Sbjct: 112 DENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171
Query: 433 YA 438
+A
Sbjct: 172 FA 173
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG- 378
G C+ ++ F DD D+FVHQ+ I + RS+ +GE VEF+V+ E+
Sbjct: 6 GTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHAD----GFRSLAEGEPVEFSVITDERSG 61
Query: 379 -FEAAGVTGPGGEPVKGSP 432
+AA VTGP G V+G+P
Sbjct: 62 KLKAADVTGPNGAAVRGAP 80
Score = 33.5 bits (73), Expect = 6.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 194 KVSGTVKWFNVKSGYGFI 247
K++GT KWFN + GYGF+
Sbjct: 3 KLTGTCKWFNAEKGYGFL 20
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 51.2 bits (117), Expect = 3e-05
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVE 351
F ++DTKED FVHQT I +NNP K + SVGDGE VE
Sbjct: 111 FINRNDTKEDTFVHQTVIKKNNP-KYLHSVGDGETVE 146
Score = 38.7 bits (86), Expect = 0.17
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
VIA KV G V WFNV++GY FINR
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINR 114
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 50.8 bits (116), Expect = 4e-05
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG- 378
G C+ + F DD ED+FVHQ +N + RS+ E VE+ + +KG
Sbjct: 13 GVCKWFDSTKGFGFITPDDGSEDIFVHQ----QNIKVEGFRSLAQDERVEYEIETDDKGR 68
Query: 379 FEAAGVTGPGGEPVKGSPYAADKRRGYHR 465
+A V+GP G PVKG D+RRG R
Sbjct: 69 RKAVNVSGPNGAPVKG-----DRRRGRGR 92
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 49.6 bits (113), Expect = 9e-05
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +1
Query: 193 ESIGHCEMVQRQEWIWFHQQDDT---KEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 363
E+ G+C+ ++ F D + K DVFVHQ++I + RS+ +G+ V+F
Sbjct: 26 EAFGNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSI----DMEGFRSLQEGDRVKFWYK 81
Query: 364 AGEKGFEAAGVTGPGGEPVKGS 429
+KG EA V GPGGE + G+
Sbjct: 82 PSKKGLEAVKVVGPGGEKLVGA 103
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 48.8 bits (111), Expect = 2e-04
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F +DD EDVFVHQ+AI + RS+ +GE V+ + +KG A VT PGG V
Sbjct: 498 FITRDDGGEDVFVHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNV 553
Query: 421 KGS 429
KG+
Sbjct: 554 KGA 556
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRKMCLC--IRLPSPVTTHVRLCARSATERRWSL 355
V+A +V GTVKWFNV++GYGFINR C C P T R +R+ L
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINRYRSAPGCGCGSRGRGGPSTRGARSASRAPDNPAKLL 115
Query: 356 PWLP 367
P+ P
Sbjct: 116 PFSP 119
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ+AI + RS+ + +AVEF ++ G+ G +A+ VT PGG
Sbjct: 20 FISPDDGGEDLFVHQSAIKSD----GYRSLNENDAVEFEIITGDDGRTKASDVTAPGGGA 75
Query: 418 VKG 426
+ G
Sbjct: 76 LSG 78
Score = 37.9 bits (84), Expect = 0.30
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFIN 250
+ E+V GTVKWFNV G+GFI+
Sbjct: 1 MGERVKGTVKWFNVTKGFGFIS 22
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 57 DIPVDVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 47.6 bits (108), Expect = 4e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+A KV GTVKWFNV++GYGFINR
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINR 54
Score = 46.4 bits (105), Expect = 9e-04
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 373 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 474
+G EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADRRR-YRRGYY 97
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 46.4 bits (105), Expect = 9e-04
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG
Sbjct: 21 FITPDDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRA 76
Query: 418 V 420
V
Sbjct: 77 V 77
Score = 33.9 bits (74), Expect = 4.9
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 188 AEKVSGTVKWFNVKSGYGFI 247
+E+V GTVKWF+ G+GFI
Sbjct: 3 SERVKGTVKWFDATKGFGFI 22
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 435
D E++FVHQT I+ RSV +GE VE+ V + +A VTGP G VKG+P
Sbjct: 25 DGSEEIFVHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAPR 80
Query: 436 AADKRR 453
+ R
Sbjct: 81 RRHRNR 86
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 43.2 bits (97), Expect = 0.008
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +1
Query: 250 QDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
Q D+ ED+FVH AI + RS+ DGE VEF+VV G+KG +A V
Sbjct: 22 QRDSGEDIFVHFRAIQGDG----YRSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 43.2 bits (97), Expect = 0.008
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +1
Query: 199 IGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
+G C+ + F +D ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 22 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIKMS----GFRSLGEQEEVEFECHRTARG 77
Query: 379 FEAAGVTGPGGEPVKGSPY 435
EA V+G G+ GS Y
Sbjct: 78 LEATRVSGRAGDECHGSTY 96
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 42.7 bits (96), Expect = 0.011
Identities = 29/76 (38%), Positives = 33/76 (43%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G C+ + F DD DVFVHQ I RS+ E VE+ EKG
Sbjct: 65 GKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKM----VGYRSLDTNEEVEYKFQFSEKGR 120
Query: 382 EAAGVTGPGGEPVKGS 429
EA VTG G KGS
Sbjct: 121 EATTVTGVDGGDCKGS 136
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 42.7 bits (96), Expect = 0.011
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 196 SIGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
S G + Q+ F DD ED+FVHQT+I + R++ +GE VEFAV GE
Sbjct: 7 STGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSD----GFRTLSEGETVEFAVDHGED 62
Query: 376 G-FEAAGVTGPGGEPVKG 426
G +A VT G G
Sbjct: 63 GRTKAVEVTAVRGSYSSG 80
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 42.3 bits (95), Expect = 0.014
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG
Sbjct: 26 FITPDDGSVELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGS 81
Query: 418 VK 423
+K
Sbjct: 82 LK 83
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 41.1 bits (92), Expect = 0.032
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +1
Query: 196 SIGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
+IG + + F +QD+ EDVFVH +AI ++ +S+ +GE V F VV G K
Sbjct: 2 AIGRVKWFNDAKGFGFIEQDNG-EDVFVHFSAIQQD----GFKSLAEGEQVSFDVVNGPK 56
Query: 376 GFEAAGV 396
G +AA V
Sbjct: 57 GLQAANV 63
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.042
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 322 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 40.7 bits (91), Expect = 0.042
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +1
Query: 253 DDTKEDVFVHQTAIARNNPRK--AVRSVGDGEAVEFAV---VAGEKGFEAAGVTGPGGEP 417
DD + DVFVHQ+A+ R+ R G++VEF V ++ +A VTG GG P
Sbjct: 30 DDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESPTDERLKAVCVTGIGGAP 89
Query: 418 VKGSPYA----ADKRRGYHRQ 468
+K P + K+RG R+
Sbjct: 90 LKAPPRTNYRRSSKKRGPRRE 110
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 40.3 bits (90), Expect = 0.056
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKA--VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
D EDVFVHQ+ + + R VR G+ +EF + E+ A VTGP G P+K +
Sbjct: 60 DGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDERR-RAKNVTGPAGAPLKKT 118
Query: 430 P 432
P
Sbjct: 119 P 119
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 39.9 bits (89), Expect = 0.074
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +1
Query: 199 IGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
+G C+ + F +D ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRG 95
Query: 379 FEAAGVTGPGGEPVKGSPY 435
EA V+ G +GS Y
Sbjct: 96 LEATRVSSRHGGSCQGSTY 114
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 39.5 bits (88), Expect = 0.098
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 414
F +D EDVF+H + P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 37 FIAPEDGGEDVFLHVNDLLI--PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 39.5 bits (88), Expect = 0.098
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V+AE+ +GTVKWFN GYGFI R
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQR 90
Score = 39.1 bits (87), Expect = 0.13
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 268 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 402
DVFVH AI + R S+ +G+ VEF+V+ G+KG +A V G
Sbjct: 95 DVFVHYRAIRGDGHR----SLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.17
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G + Q+ F D +D+FVHQ++I + RS+ E+VEF V G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVDNSGR 72
Query: 382 -EAAGVTGPGGEPVKGS 429
+A V+GP G PV+G+
Sbjct: 73 PKAIEVSGPDGAPVQGN 89
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 38.3 bits (85), Expect = 0.23
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 399
D +DVFVH++A+A R + S+ +G+ V VV G+KG EA +T
Sbjct: 196 DGGKDVFVHRSALA----RAGLDSLAEGQQVTMGVVEGQKGREAQSIT 239
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 38.3 bits (85), Expect = 0.23
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F DD +DVFVH TAI N R++ + + VEF++ G++G AA V
Sbjct: 20 FITPDDGSKDVFVHFTAIQSNE----FRTLNENQKVEFSIEQGQRGPAAANV 67
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 37.1 bits (82), Expect = 0.52
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F QDD DVF H TAI + R++ +G+ VEF G KG +A V
Sbjct: 17 FIAQDDGGADVFCHHTAIQTD----GFRTLAEGQKVEFETRKGPKGLQAENV 64
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 36.7 bits (81), Expect = 0.69
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
D EDVF H TAI + R++ +G+ VEF V G KG +A V
Sbjct: 21 DNGEDVFCHHTAINMD----GFRTLQEGQQVEFEVTRGPKGLQAQNV 63
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 36.7 bits (81), Expect = 0.69
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F QD EDVF H TAI + R++ +G+ V+F V G KG +A V
Sbjct: 50 FITQDGGGEDVFCHHTAINMD----GFRTLQEGQKVQFDVARGPKGLQAQNV 97
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 36.7 bits (81), Expect = 0.69
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINRMTPRKMCLCIR 286
GTVKWFNV GYGF+ R + ++ + R
Sbjct: 79 GTVKWFNVSKGYGFVTRASGEEIFVHFR 106
Score = 35.1 bits (77), Expect = 2.1
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 265 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
E++FVH +I+ N RK +R +G+ +EF+VV G+KG +A V
Sbjct: 99 EEIFVHFRSISGNG-RKVLR---EGQKIEFSVVDGDKGPQAEDV 138
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 36.7 bits (81), Expect = 0.69
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 265 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 429
EDVFVHQ+ I + RS+ + E VE V+ +A VTGP G V G+
Sbjct: 26 EDVFVHQSEIYADG----FRSLHENEKVELEVIMDNNRKKAIHVTGPNGTHVTGT 76
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 36.7 bits (81), Expect = 0.69
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F QD EDVF H +AI + R++ +G+ VEF V G KG +A V
Sbjct: 17 FITQDGGGEDVFCHHSAINMD----GFRTLQEGQKVEFEVTRGPKGLQAQNV 64
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 35.9 bits (79), Expect = 1.2
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G + +++ F +DD + DVFVH +AI N R+ +++ G+ VEF V KG
Sbjct: 20 GTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPN--RQGFKTLVQGQRVEFEVDQDSKGP 77
Query: 382 EAAGV 396
A V
Sbjct: 78 RAKNV 82
Score = 33.5 bits (73), Expect = 6.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 197 VSGTVKWFNVKSGYGFINR 253
++GTVKWF+ + GYGF+ R
Sbjct: 18 ITGTVKWFSKEKGYGFLTR 36
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 35.9 bits (79), Expect = 1.2
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFIN 250
GTVKWFN + GYGFIN
Sbjct: 18 GTVKWFNTQKGYGFIN 33
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 35.9 bits (79), Expect = 1.2
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFINR 253
++ GTVKWFNV G+GFI R
Sbjct: 81 DREQGTVKWFNVSKGFGFITR 101
>UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protein;
n=3; Oryza sativa|Rep: Cold shock domain protein 2-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 221
Score = 35.9 bits (79), Expect = 1.2
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEP 417
F DD ED+F+HQ+++ + RS+ D + +E +V + + G +A VT PG +
Sbjct: 21 FITPDDGSEDLFIHQSSLKFD----GYRSLNDDDVIELSVGSSDDGRTKAVDVTAPGSDA 76
Query: 418 VKG 426
G
Sbjct: 77 HTG 79
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F Q DD EDVFVH I + + + +G+ VE+ + KG +A V
Sbjct: 17 FIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGTQAKDV 68
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 35.5 bits (78), Expect = 1.6
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G C+ + F D T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTGP-GGEPVKGS 429
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 399
D +DVFVH +AI N ++++ +G+ VEF + G+KG A VT
Sbjct: 24 DGSKDVFVHFSAIQGNG----LKTLAEGQNVEFEIQDGQKGPAAVNVT 67
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 35.1 bits (77), Expect = 2.1
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFINRMT 259
E+ +GTVKWFN + GYGFI T
Sbjct: 58 ERQNGTVKWFNDEKGYGFITPET 80
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 34.7 bits (76), Expect = 2.8
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFINR 253
+GTVKWFN + G+GFI+R
Sbjct: 3 NGTVKWFNAEKGFGFISR 20
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 34.7 bits (76), Expect = 2.8
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINR 253
G VKWFNVK G+GFI R
Sbjct: 108 GLVKWFNVKKGFGFITR 124
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 34.3 bits (75), Expect = 3.7
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFI 247
++E + GTVKWF+ + GYGFI
Sbjct: 1 MSETLQGTVKWFSAQKGYGFI 21
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 34.3 bits (75), Expect = 3.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFINR 253
+ +K+ GTVKWFN G GFI R
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQR 23
>UniRef50_Q38CH1 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 334
Score = 34.3 bits (75), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 PRKMC-LCIRLPSPVTTHVRLCARSATERRWSLPWL 364
PR+ C +C RL +P H R+C R R PW+
Sbjct: 114 PRRFCHICERLKAPREYHCRICGRCIARRDHHCPWI 149
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 34.3 bits (75), Expect = 3.7
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
D +DVFVH +AI N+ +++ +G+ VEF++ G+KG A V
Sbjct: 25 DGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIEQGQKGPSAVNV 67
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 34.3 bits (75), Expect = 3.7
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F QD+ DVFVH AIA + +++ +G+ V F V G KG +A+ V
Sbjct: 20 FLTQDNGGADVFVHFRAIA----SEGFKTLDEGQKVTFEVEQGPKGLQASNV 67
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 33.9 bits (74), Expect = 4.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFINR 253
++++ GTVKWFN G+GFI R
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQR 23
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 33.9 bits (74), Expect = 4.9
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFI 247
+GTVKWFNV+ G+GFI
Sbjct: 3 TGTVKWFNVQKGFGFI 18
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 33.9 bits (74), Expect = 4.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINR 253
GTVKWFN + G+GFI R
Sbjct: 4 GTVKWFNAEKGFGFIER 20
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 33.9 bits (74), Expect = 4.9
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFI 247
++++ SGTVKWFN + G+GFI
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFI 21
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 33.5 bits (73), Expect = 6.4
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 396
F D DVFVH ++I + +S+ +G++V+F +V G+KG +A V
Sbjct: 17 FISVDGGGPDVFVHYSSIVADG----YKSLDEGQSVQFEIVQGQKGPQADNV 64
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 33.5 bits (73), Expect = 6.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFI 247
GTVKWFN + GYGFI
Sbjct: 4 GTVKWFNAEKGYGFI 18
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 33.5 bits (73), Expect = 6.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 197 VSGTVKWFNVKSGYGFINR 253
VSG VKWFN + G+GFI R
Sbjct: 33 VSGIVKWFNDEKGFGFIER 51
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFINR 253
++ V+GTVKWFN G+GFI +
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFIQQ 23
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINR 253
G VKWFN + GYGFI R
Sbjct: 4 GRVKWFNAEKGYGFIER 20
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 200 SGTVKWFNVKSGYGFI 247
+GTVKWFN GYGFI
Sbjct: 97 TGTVKWFNATKGYGFI 112
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 33.1 bits (72), Expect = 8.5
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 194 KVSGTVKWFNVKSGYGFIN 250
K++GTVKWFN G+GFI+
Sbjct: 3 KLTGTVKWFNDDKGFGFIS 21
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 33.1 bits (72), Expect = 8.5
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +2
Query: 203 GTVKWFNVKSGYGFINRMTPRK 268
GTVKWFN GYGFI T K
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEK 56
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 33.1 bits (72), Expect = 8.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 191 EKVSGTVKWFNVKSGYGFINR 253
++ G VKWFNV G+GF+ R
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR 104
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,279,944
Number of Sequences: 1657284
Number of extensions: 12203706
Number of successful extensions: 38482
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 36723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38450
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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