Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30200.Seq
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 94 1e-19
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 65 6e-11
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 62 3e-10
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 62 3e-10
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 61 8e-10
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 36 0.045
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 36 0.045
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 36 0.045
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 36 0.045
Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical p... 28 6.9
AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical... 28 6.9
U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protei... 28 9.1
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 28 9.1
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 93.9 bits (223), Expect = 1e-19
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F + DT ED+FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV
Sbjct: 36 FINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPV 95
Query: 421 KGSPYAADK 447
+GS YAAD+
Sbjct: 96 QGSKYAADR 104
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINR 253
V A KV GTVKWFNVK+GYGFINR
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINR 39
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 64.9 bits (151), Expect = 6e-11
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEP 417
F ++D ++D+FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+
Sbjct: 81 FISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDN 140
Query: 418 VKGSPYAADKRRGYHRQYFPR 480
V GS Y + + PR
Sbjct: 141 VIGSRYRHKLLSRFRKNRKPR 161
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 185 IAEKVSGTVKWFNVKSGYGFINRMTPRKMCLCIRLPSPVTTHVRLCARSATER 343
I + G VKW++V YGFI+R K + H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEK---------DIFVHQTAIAKSATEK 105
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 432
D ED FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS
Sbjct: 112 DENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171
Query: 433 YA 438
+A
Sbjct: 172 FA 173
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTP 262
VI V G VKWF+V+ YGF+ R P
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKP 110
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 432
D ED FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS
Sbjct: 112 DENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171
Query: 433 YA 438
+A
Sbjct: 172 FA 173
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTP 262
VI V G VKWF+V+ YGF+ R P
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKP 110
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 61.3 bits (142), Expect = 8e-10
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEP 417
F + D ++DVFVHQTAI++++ K +R++ D E V F +V G+ G EAA VTGP G
Sbjct: 79 FISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVN 138
Query: 418 VKGSPY 435
V GS Y
Sbjct: 139 VSGSKY 144
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRK 268
V+ + G VKW++V YGFI+R K
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEK 87
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.045
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G C+ + F D T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 376 GFEAAGVTGP-GGEPVKGS 429
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.045
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G C+ + F D T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTGP-GGEPVKGS 429
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.045
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G C+ + F D T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTGP-GGEPVKGS 429
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.045
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 202 GHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G C+ + F D T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTGP-GGEPVKGS 429
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 304 CYGRWQSDAQTHLPWCHPVDETISTLDV 221
C+G DA WC PVDE T+D+
Sbjct: 79 CFGEGNPDADN---WCVPVDEVPVTIDI 103
>AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 304 CYGRWQSDAQTHLPWCHPVDETISTLDV 221
C+G DA WC PVDE T+D+
Sbjct: 79 CFGEGNPDADN---WCVPVDEVPVTIDI 103
>U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protein
53 protein.
Length = 160
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 367 GEKGFEAAGVTGPGGEPVK-GSPYAADKRRGYHRQYFPR 480
G+KGF GV GP GEP + G Y +D G + PR
Sbjct: 49 GDKGFP--GVAGPAGEPGEPGHIYVSDGPPGKDGETGPR 85
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 253 DDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
D+ D+FV + + RK V G +E A+ +GEK
Sbjct: 211 DELVPDIFVENKLVTKKKLRKKVVKKGLTNTIELALKSGEK 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,251
Number of Sequences: 27780
Number of extensions: 283151
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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