Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30199.Seq
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 30 2.5
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 29 3.3
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 29 4.4
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 29 4.4
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 29 4.4
05_06_0059 - 25264704-25266032 29 4.4
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 4.4
01_07_0278 - 42440405-42440515,42440765-42440830,42440995-424410... 29 4.4
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
Q+ G FL G E+ RS + + SA R GE A+ +D+ +R +GK
Sbjct: 20 QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79
Query: 285 PAKGVTVPT 311
G T PT
Sbjct: 80 SNPGET-PT 87
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNE 393
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 186 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKET-QNVKSHDIKS 362
RSS KS GEG + E + + + K +P P K T+ + K + + V+ +S
Sbjct: 73 RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132
Query: 363 GEQQKGKGPA 392
K K A
Sbjct: 133 PSPTKAKALA 142
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>05_06_0059 - 25264704-25266032
Length = 442
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 500 ASLRSSA*LQRAPQF*RQQPGRCRASRFHQDHRVSLREGPRGPRSFDNRGKREFDRR 670
A+ +SA +R+P+ R P R R++R D R G R R +RG+ DRR
Sbjct: 58 AAASASAVAKRSPRRVRSPPRRGRSNREELDRARDRRHGGRSDREVFDRGR---DRR 111
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHD 353
+KE++ KE K E K +T PT + +E + K HD
Sbjct: 557 EKEEKAKLKEPKAAEEDLALKEMTGPTAREEEELREAKQHD 597
>01_07_0278 -
42440405-42440515,42440765-42440830,42440995-42441085,
42441342-42441496,42441823-42442044,42442097-42442210,
42442833-42442912,42443289-42443505
Length = 351
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 636 KERGPRGPSRRLTRWSWWNRDALHRP 559
++RG GP RR W W +H P
Sbjct: 28 RQRGAPGPPRRCVDWFSWTESTVHGP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,267,705
Number of Sequences: 37544
Number of extensions: 405296
Number of successful extensions: 1142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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