Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30199.Seq
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 2.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 2.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 2.2
Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 28 9.0
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 28 9.0
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 28 9.0
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQKGKGPART 398
++KE +GKPE K K T I ET + D+ +Q + + RT
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRT 9220
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQKGKGPART 398
++KE +GKPE K K T I ET + D+ +Q + + RT
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRT 9240
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 249 SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQKGKGPART 398
++KE +GKPE K K T I ET + D+ +Q + + RT
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRT 9240
>Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical
protein W01B6.5 protein.
Length = 536
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 264 KGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQKGKGPART 398
KG P+ +P G T G K N S D+K Q GP++T
Sbjct: 48 KGTPKERPNCGKTKNETSGKKLRSNDVSPDVKDRLQLSEHGPSKT 92
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSHDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSHDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
K + AG+G K+ + KE KG + + K + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSHDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSHDIKSGEQQK 377
+K A E ++K+D++ +KE + K TV +K E K IK G K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 569 RASRFHQDHRVSLRE--GPRGPRSFDNRGKR 655
R+ RF ++HR E PRGPR +++ G+R
Sbjct: 451 RSVRFEEEHRRHGDEYRDPRGPRDYNDYGRR 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,522
Number of Sequences: 27780
Number of extensions: 317719
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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