Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30199.Seq
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   7.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   7.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   7.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   7.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   7.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 VTVPTRKGIKETQNVKSHDIKSG 365
           VTVP  KG+  + NV S  I +G
Sbjct: 82  VTVPRYKGVPSSLNVISEKIGNG 104


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 664 PKIPALTKTGVKSVR 708
           P  P++T+TG+ SVR
Sbjct: 335 PSNPSITRTGLSSVR 349


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 706 ELISHRFLSEPESSVELTFASIVKRTRPARSLTKAHAVVLVEPRR 572
           +LIS R L E  SS+E  +   ++   P  S      ++ +  +R
Sbjct: 635 KLISMRHLKEEVSSIETNYECGLRFEDPMISFQPGDTIICINIKR 679


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 288 SYRKYRETSKERSRDRKERERSKEPK 313


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 288 SYRKYRETSKERSRDRKERERSKEPK 313


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 177 VQEKSVSVHYSHTVGILHCD 118
           +Q+   SVH+ H  G++H D
Sbjct: 15  IQQILESVHHCHHNGVVHRD 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,038
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)