Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30199.Seq
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             31   0.90 
At4g17410.1 68417.m02607 expressed protein                             31   1.2  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    29   4.8  
At4g38560.1 68417.m05459 expressed protein                             28   6.3  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKG-KPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQK 377
           E  Q   + S K  KG K E K AK V     K +  T+N      +SGE  K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 246 RSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKSGEQQKGKGPART 398
           R R+ ++  PE + ++  T P R   ++++  + HD+ S   ++   P  T
Sbjct: 572 RRRRSDRSSPERQSSRRFTSPPRSSSRKSERDRHHDLDSEHDRRRDRPRET 622


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
            protein contains InterPro entry IPR000504: RNA-binding
            region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +3

Query: 147  SSEQIRSFLGR*DRSS*CVKSARAGE--GAQKEDQRSR-KENKGKPEPKPAKGVTVPTRK 317
            S E+ +S +   D ++   +  R  E   + K+ Q  R KE   KP+PK +K ++ P ++
Sbjct: 877  SKEEAKSNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQKETTEKPDPKISKDLSEPRKR 936

Query: 318  GIKETQNVKSHDIKSGEQQKGKG 386
               E +  ++ + +   +++G+G
Sbjct: 937  KFGEDRGEENRNGQRKRKKQGQG 959


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSHDIKS-GEQQKGKGPAR 395
           +K + R+R +      P+P      P R  I +TQ V    ++S G +   KG  R
Sbjct: 163 RKSEHRTRNQGPRSKTPEPRGSYLEPPRSRIPQTQPVPHRSLESAGLKSPQKGETR 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,414
Number of Sequences: 28952
Number of extensions: 302915
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)