Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30194.Seq
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    34   0.12 
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  33   0.35 
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)                 29   3.3  
SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         29   5.8  

>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +2

Query: 137 YENKSLEYIFNHQTKLNK*NNGSRFDESVLYKSEFAFTREVIELTRIIDQSSSTKDLQTI 316
           + ++ LE+ F    KL   NN +  +++++ K  +     + EL RIID S   K+   +
Sbjct: 19  FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYCHKAVIEELKRIIDDSEVMKEDDAL 78

Query: 317 FPQ 325
           +PQ
Sbjct: 79  WPQ 81


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -1

Query: 402 YRLTSHVILFKSHPVLNEEEKMLFIN*GNIVCRSLVELDWSIILVNSMTSL 250
           Y L +  +LF+S P+    EK ++ +  N+ C  + E DW  + ++++  L
Sbjct: 301 YDLNTKELLFQSAPMYQYLEKKMYRDAYNVACLGVTEGDWRALALDALEGL 351


>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
          Length = 1387

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 275  IIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLKSITCDVNRYEFEALISFLEP 436
            I+D  +++KD++  + QL+N  FS+       L SIT    R    AL+ F  P
Sbjct: 1204 ILDDCAASKDVKRRYDQLVNLAFSARHVITQQLTSITKPF-RENIAALVFFYTP 1256


>SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 468 NL*HSRNIGP*GSKKLIRASNSYRLTSHVILFKS 367
           +L HSRN+    SK L R+++ YRL+SH IL  S
Sbjct: 50  DLYHSRNLYR--SKDLYRSNDLYRLSSHEILADS 81


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 230 KSEFAFTREVIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLK 376
           +++F+  +++   TR+ D  + +KDL  +  ++ NN  +S   +GW L+
Sbjct: 315 RADFSVMKDLAVHTRL-DPKARSKDLNKLISEINNNPDASGELSGWGLR 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,927,657
Number of Sequences: 59808
Number of extensions: 424912
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)