Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30194.Seq
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 207 REPLFYLFNLV 175
           R P+FY+FNL+
Sbjct: 211 RRPMFYVFNLI 221


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 749 PNXPHAKCXSTTTXPN 702
           PN P A+C +TT   N
Sbjct: 226 PNQPSAQCEATTMQEN 241


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 539 KEGDAHNFMADMLTADAQT 595
           K GD    M D+LTA  QT
Sbjct: 28  KNGDYTKIMPDILTAIGQT 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,608
Number of Sequences: 438
Number of extensions: 4215
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)