Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30194.Seq
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19490.2 68417.m02867 expressed protein                             29   3.6  
At4g19490.1 68417.m02866 expressed protein                             29   3.6  
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha...    29   4.7  
At1g02140.1 68414.m00140 mago nashi family protein similar to Ma...    28   6.2  
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    28   8.3  
At2g39910.1 68415.m04905 expressed protein                             28   8.3  

>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 236  EFAF--TREVIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFST 361
            EFA+  TREV  L R++ ++    D+Q IF Q+I+ I + +  T
Sbjct: 949  EFAWPLTREVGYLHRVLSETLHEADVQAIFRQVISIIHTQTSQT 992


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 236  EFAF--TREVIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFST 361
            EFA+  TREV  L R++ ++    D+Q IF Q+I+ I + +  T
Sbjct: 949  EFAWPLTREVGYLHRVLSETLHEADVQAIFRQVISIIHTQTSQT 992


>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1216

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 560 NCGHLPLSNVTCRSRGNNLMAIRTSTE 480
           N GHLPL+ +T    G N +A R +TE
Sbjct: 753 NAGHLPLAYITASVHGLNDIAERLATE 779


>At1g02140.1 68414.m00140 mago nashi family protein similar to Mago
           Nashi, Genbank Accession Number U03559; contains Pfam
           PF02792: Mago nashi protein domain
          Length = 150

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 137 YENKSLEYIFNHQTKLNK*NNGSRFDESVLYKSEFAFTREVIELTRIIDQSSSTKDLQTI 316
           + ++ LE+ F    KL   NN +  +++++ K  F     + E  RI+ +S   K+    
Sbjct: 21  FGHEFLEFEFREDGKLRYANNSNYKNDTIIRKEVFLTPAVLKECKRIVSESEILKEDDNN 80

Query: 317 FPQ 325
           +P+
Sbjct: 81  WPE 83


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
           region
          Length = 1088

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 545 GDAH--NFMADMLTADAQTMNMISLGTQSFRLLHFS 646
           GD H  NF  D  T   +    +SLGTQ   L  FS
Sbjct: 601 GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFS 636


>At2g39910.1 68415.m04905 expressed protein
          Length = 436

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 233 SEFAFTREVIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLKSITCDVNR 400
           S+F+      +L  +++ S   + L  + P+L + I  SS   G D + ++  + R
Sbjct: 117 SDFSSNSNAEKLVELVEDSEKIEMLPIVLPELKDGIEKSSLGKGSDAEDVSAAMAR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,753,043
Number of Sequences: 28952
Number of extensions: 302742
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)