Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30193.Seq
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 118 5e-28
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 118 5e-28
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 41 1e-04
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 29 0.55
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 28 0.95
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 27 1.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.1
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 25 8.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 8.9
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 118 bits (284), Expect = 5e-28
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGISATHSSRFIPLK 427
+MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGI ATHSSRFIPLK
Sbjct: 96 EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153
Score = 95.5 bits (227), Expect = 4e-21
Identities = 46/82 (56%), Positives = 56/82 (68%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
L+KKR FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK
Sbjct: 14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73
Query: 189 EAPPNEKPEIVKTHLRNMIIVP 254
EAP NEKP VKTHLRNMII+P
Sbjct: 74 EAPLNEKPATVKTHLRNMIILP 95
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 118 bits (284), Expect = 5e-28
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGISATHSSRFIPLK 427
+MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGI ATHSSRFIPLK
Sbjct: 97 EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
Score = 96.3 bits (229), Expect = 2e-21
Identities = 46/82 (56%), Positives = 56/82 (68%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
L+KKR FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK
Sbjct: 15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74
Query: 189 EAPPNEKPEIVKTHLRNMIIVP 254
EAP NEKP VKTHLRNMII+P
Sbjct: 75 EAPLNEKPATVKTHLRNMIILP 96
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 364
+MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 62 RMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 28.7 bits (61), Expect = 0.55
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 420 GMNLELCVALIPGLPCFTGLYVTENS 343
G+N+ LCV + PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 0.95
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 411 LELCVALIPGLPCFTGLYVTE 349
LELC + PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 10 SRKSVFSGSSLTGELISISSLICPMSNSWN 99
S+ + + +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 284 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 370
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 186 KEAPPNEKPEIVKTHLRNMII 248
K A P++KP + THL +++I
Sbjct: 60 KRARPSQKPPLRSTHLPHLLI 80
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 138 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 233
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,044
Number of Sequences: 5004
Number of extensions: 33842
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -