Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30193.Seq
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   1e-28
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)                   28   4.0  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.3  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.2  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  122 bits (295), Expect = 1e-28
 Identities = 58/82 (70%), Positives = 68/82 (82%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+AKK
Sbjct: 10  IKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKK 69

Query: 189 EAPPNEKPEIVKTHLRNMIIVP 254
           EA P EKPE+VKTHLRNMIIVP
Sbjct: 70  EAAPMEKPEVVKTHLRNMIIVP 91



 Score =  120 bits (289), Expect = 7e-28
 Identities = 51/58 (87%), Positives = 56/58 (96%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGISATHSSRFIPLK 427
           +M+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGI ATHSSRFIPLK
Sbjct: 92  EMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149


>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
          Length = 323

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 350 SVTYKPVKHGRPGISATHS 406
           S+ Y+   H  PGISATHS
Sbjct: 80  SLPYRSATHSSPGISATHS 98



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 350 SVTYKPVKHGRPGISATHS 406
           S+ Y+   H  PGISATHS
Sbjct: 194 SLPYRSATHSLPGISATHS 212


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 308  EIKPEMIGHYLGEFSVTYKPVKHGRPGISATHSSRFIP 421
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMXVRAGGSLVVLNV 147
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 432  LYLSGMNLELCVALIPGLPCFTGLY 358
            L+L G NL LC  L+P   C   LY
Sbjct: 1572 LFLMGWNLILCALLLPKAACGDDLY 1596


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 296  FNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGISAT 400
            +N V +K E+ G Y+   S+ +    +  PG+S T
Sbjct: 1882 YNDVAMKLELYGSYVCNSSILFSNSTYAAPGVSYT 1916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,320
Number of Sequences: 59808
Number of extensions: 260177
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)