Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30192.Seq
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 142 4e-34
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 142 4e-34
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 142 4e-34
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 87 1e-17
07_03_1357 - 25982861-25983068,25983354-25983361 55 7e-08
07_03_1358 - 25984897-25984997,25985623-25985650 47 2e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.45
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 4.2
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 5.6
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 7.4
08_02_0810 + 21431719-21431869,21433661-21433704,21434432-21434704 28 9.8
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240... 28 9.8
02_05_1008 - 33461225-33462334 28 9.8
02_01_0744 + 5548306-5549445 28 9.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 142 bits (343), Expect = 4e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +2
Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 92 QNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 151
Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGRTSAR 526
++S KHIDFSL SPFGGG PGRVK + +
Sbjct: 152 VESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
Score = 117 bits (282), Expect = 9e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +3
Query: 12 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 191
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 192 KRLFEGNALLRRLVRIGVLDENR 260
+R+FEG ALLRR+ R G+L + +
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQ 92
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 142 bits (343), Expect = 4e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +2
Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 115 QNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 174
Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGRTSAR 526
++S KHIDFSL SPFGGG PGRVK + +
Sbjct: 175 VESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
Score = 116 bits (279), Expect = 2e-26
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +3
Query: 18 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 197
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 198 LFEGNALLRRLVRIGVLDENR 260
+FEG ALLRR+ R G+L + +
Sbjct: 95 IFEGEALLRRMNRYGLLADGQ 115
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 142 bits (343), Expect = 4e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +2
Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 308 QNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 367
Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGRTSAR 526
++S KHIDFSL SPFGGG PGRVK + +
Sbjct: 368 VESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
Score = 117 bits (282), Expect = 9e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +3
Query: 12 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 191
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 192 KRLFEGNALLRRLVRIGVLDENR 260
+R+FEG ALLRR+ R G+L + +
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQ 308
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 87.4 bits (207), Expect = 1e-17
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = +3
Query: 12 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 191
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 192 KRLFEGNALLRRLVRIGVLDENR 260
+R+FEG ALLR + R G+L E +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQ 81
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 391
Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 81 QNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = +2
Query: 392 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVK 508
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVK
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVK 41
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 12 FSKTYVTPRRPFEKARLDQELKIIGEYG 95
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 308 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 433
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 307 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 435
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 290 IEDFLERRLQTQVFKAGLAKSIHHAR 367
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 66 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 188
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0810 + 21431719-21431869,21433661-21433704,21434432-21434704
Length = 155
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1
Query: 513 LPLTRPGRPPPNGD 472
LPLT PGRP PN D
Sbjct: 127 LPLTAPGRPRPNRD 140
>05_05_0092 -
22323049-22323224,22323840-22323887,22323962-22324016,
22324260-22324360,22324457-22324518,22324683-22324881,
22325107-22325254,22325331-22325377,22325928-22325995,
22326428-22326542,22326657-22326816
Length = 392
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 552 HHWRSATLSLAEVLPLTRPGRP 487
H WR++ L+LAE L + P +P
Sbjct: 360 HAWRNSRLTLAEALEFSGPSKP 381
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +2
Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS ++
Sbjct: 165 QILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNLL- 217
Query: 437 LDSGKHIDFSLKSPFGGGR 493
+DSG+ + + FG GR
Sbjct: 218 IDSGRRVKI---ADFGVGR 233
>02_01_0744 + 5548306-5549445
Length = 379
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 555 LHHWRSATLSLAEVLPLTRPGRPPPNGD 472
+H W A A+ + + +PG PPP GD
Sbjct: 323 VHDWIFAGGPAAQAVFVFKPGAPPPGGD 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,969
Number of Sequences: 37544
Number of extensions: 386173
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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