Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30192.Seq
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   3e-39
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.35 
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   10.0 
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   10.0 

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  159 bits (385), Expect = 3e-39
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = +2

Query: 263 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 442
           KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLD
Sbjct: 90  KLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLD 149

Query: 443 SGKHIDFSLKSPFGGGRPGRVK 508
           S KHIDFSL SP+GGGRPGRVK
Sbjct: 150 SQKHIDFSLNSPYGGGRPGRVK 171



 Score =  157 bits (382), Expect = 7e-39
 Identities = 76/84 (90%), Positives = 80/84 (95%)
 Frame = +3

Query: 9   VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 188
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 189 PKRLFEGNALLRRLVRIGVLDENR 260
           P+RLFEGNALLRRLVRIGVLDE+R
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESR 88


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 36  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 194
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 299 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 433
           F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+F+V
Sbjct: 105 FCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPAFLV 149


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 269 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 445
           D + G++  D+    L     K  +A        L  QR + V K VV     F+++ + 
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187

Query: 446 GKHIDFSLKSPFGGGRPGRVKGRTSARD 529
             H+      P+GGG+ G+ K  +S  D
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNSSTLD 214


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 416 CSQLACGHEYAFAGSKFWHDGWTSP 342
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 51  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 194
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,293,105
Number of Sequences: 59808
Number of extensions: 424835
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)