Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30192.Seq
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   161   5e-40
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    35   0.077
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   3.8  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   5.0  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  161 bits (391), Expect = 5e-40
 Identities = 75/87 (86%), Positives = 83/87 (95%)
 Frame = +2

Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
           +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFIVR
Sbjct: 90  KMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVR 149

Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGRT 517
           LDS KHIDFSL+SP+GGGRPGRVK RT
Sbjct: 150 LDSQKHIDFSLQSPYGGGRPGRVKRRT 176



 Score =  145 bits (352), Expect = 3e-35
 Identities = 68/85 (80%), Positives = 78/85 (91%)
 Frame = +3

Query: 6   SVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 185
           +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTLE+K
Sbjct: 6   TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65

Query: 186 DPKRLFEGNALLRRLVRIGVLDENR 260
           DPKRLFEGNALLRRLV+IGVLDE +
Sbjct: 66  DPKRLFEGNALLRRLVKIGVLDETK 90


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 299 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 475
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 253 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 423
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 416 CSQLACGHEYAFAGSKFWHDG 354
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 419 GCSQLACGHEYAFAGSKFWH 360
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,390
Number of Sequences: 27780
Number of extensions: 310586
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)