Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30192.Seq
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   147   8e-36
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   145   3e-35
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    32   0.38 
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   1.5  
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family...    29   3.5  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   4.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   6.2  
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    28   6.2  
At1g43730.1 68414.m05028 hypothetical protein                          28   6.2  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  147 bits (356), Expect = 8e-36
 Identities = 69/86 (80%), Positives = 78/86 (90%)
 Frame = +2

Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
           Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VNIPSF+VR
Sbjct: 92  QNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVR 151

Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGR 514
           LDS KHIDF+L SPFGGGRPGRVK R
Sbjct: 152 LDSQKHIDFALTSPFGGGRPGRVKRR 177



 Score =  129 bits (311), Expect = 2e-30
 Identities = 56/83 (67%), Positives = 73/83 (87%)
 Frame = +3

Query: 12  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 191
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 192 KRLFEGNALLRRLVRIGVLDENR 260
           +R+FEG ALLRR+ R G+LDE++
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQ 92


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  145 bits (351), Expect = 3e-35
 Identities = 67/86 (77%), Positives = 78/86 (90%)
 Frame = +2

Query: 257 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 436
           Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 92  QNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVR 151

Query: 437 LDSGKHIDFSLKSPFGGGRPGRVKGR 514
           ++S KH+DFSL SPFGGGRPGRVK R
Sbjct: 152 VESQKHVDFSLTSPFGGGRPGRVKRR 177



 Score =  128 bits (309), Expect = 4e-30
 Identities = 57/83 (68%), Positives = 72/83 (86%)
 Frame = +3

Query: 12  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 191
           + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+EK+P
Sbjct: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNP 69

Query: 192 KRLFEGNALLRRLVRIGVLDENR 260
           +R+FEG ALLRR+ R G+LDE +
Sbjct: 70  RRIFEGEALLRRMNRYGLLDETQ 92


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 284 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 433
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+V
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -3

Query: 490 TSTEWRFQREVNVLARVQAHN 428
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
           protein
          Length = 291

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 552 HHWRSATLSLAEVLPLTRPGRPPPN 478
           HHWR+ +L+L+ +   + P  PPP+
Sbjct: 48  HHWRNHSLNLSPLPTTSSPPLPPPD 72


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 18  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 134
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 256 TDETRLCAWSED*GLLGASSADAGVQSW 339
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 492 RPPPNGDFREKSMCLPESRRTIND 421
           RPPP+GD    + C+ E   T+ D
Sbjct: 58  RPPPSGDTVPNNFCIIEGSETVQD 81


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 374 SKFWHDGWTSPGQL 333
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,273
Number of Sequences: 28952
Number of extensions: 290438
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)