Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   6.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   6.6  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 230 YNLF*IIIHLFDTRVAISHVIFMILKY*IEYYRRESVQALTYWIPNT 90
           +NL+ +++ LFD  + IS V   + +Y   Y  R    + TY++ NT
Sbjct: 120 FNLYMVLLLLFDAYLWISSVGVRMFQY---YIGR----SFTYYVCNT 159


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 618 VKEEDLITCNIETEII*SFIAPTHNIIYRYLPKY 517
           VK+E   TC  +TE    F  P  N  Y+Y   Y
Sbjct: 191 VKDE---TCQYDTESSYQFNDPQFNFNYQYNQAY 221


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 618 VKEEDLITCNIETEII*SFIAPTHNIIYRYLPKY 517
           VK+E   TC  +TE    F  P  N  Y+Y   Y
Sbjct: 211 VKDE---TCQYDTESSYQFNDPQFNFNYQYNQAY 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,761
Number of Sequences: 336
Number of extensions: 3677
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)