Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    29   0.59 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   4.2  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.6  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 ISLNLPDLARH*HCV*MVLVWDGIKIRYFG 526
           IS N  D AR  + +  V++WDGI I Y+G
Sbjct: 329 ISHNNTDQARIMNAITFVMMWDGIPIIYYG 358


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 699 IMWVSCSLLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII*SFIAPTH 547
           I W++ + +  S  +A +      F D+K  D++TC  +   + S I+P+H
Sbjct: 325 ISWITLAHVVYSNARAQNSFVDSTFFDIKNTDVLTCLFDYLFL-SSISPSH 374


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 126 FTPIVFDSIFQYHKNYM 176
           FTP + ++I+Q+ +NYM
Sbjct: 768 FTPFITENIYQHLRNYM 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,865
Number of Sequences: 5004
Number of extensions: 60919
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)