Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0368 + 28792168-28792372,28792654-28792853,28793218-287936...    31   1.1  

>01_06_0368 +
           28792168-28792372,28792654-28792853,28793218-28793675,
           28793796-28793847
          Length = 304

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +2

Query: 53  SLDFFVMKYSLSKYLESNKLMPEQIHAYSIRFNISVS*KLHVKLQHAYQKGV 208
           ++D  V K  L+K LES K   E +   S++ + ++S K ++ ++HA   G+
Sbjct: 102 AVDLLVQKKKLTKALESIKQRIEVLDKLSMKISEAISVKQNMLIEHALHPGM 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,999
Number of Sequences: 37544
Number of extensions: 326512
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)