Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   6.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   6.4  
AY028782-1|AAK32956.1|  501|Anopheles gambiae cytochrome P450 pr...    23   8.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 545 LCVGAIKLQIISVSMLHVIKSSSLTSEKQWAVPHEMALHPELLSNEQLTHI 697
           +C+     Q+I V++ + I +++L  E+ W   +++   P+     Q+ H+
Sbjct: 55  VCIKLKLSQLIDVNLKNQIMTTNLWVEQSW-YDYKLRWEPKEYGGVQMLHV 104


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 545 LCVGAIKLQIISVSMLHVIKSSSLTSEKQWAVPHEMALHPELLSNEQLTHI 697
           +C+     Q+I V++ + I +++L  E+ W   +++   P+     Q+ H+
Sbjct: 55  VCIKLKLSQLIDVNLKNQIMTTNLWVEQSW-YDYKLRWEPKEYGGVQMLHV 104


>AY028782-1|AAK32956.1|  501|Anopheles gambiae cytochrome P450
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 397 SDRVQTCTLKFACNSITRPN 338
           +D + TC     CNS+  PN
Sbjct: 180 TDVIGTCAFGIECNSLNDPN 199


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,189
Number of Sequences: 2352
Number of extensions: 14085
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)