Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D50550-1|BAA19516.1| 1032|Homo sapiens LLGL protein.                   31   3.7  
BC051466-1|AAH51466.1|  279|Homo sapiens LLGL1 protein protein.        31   3.7  
BC028214-1|AAH28214.1|  467|Homo sapiens LLGL1 protein protein.        31   3.7  
BC028037-1|AAH28037.1|  467|Homo sapiens LLGL1 protein protein.        31   3.7  
X86371-1|CAA60130.1| 1057|Homo sapiens hugl protein.                   31   6.5  

>D50550-1|BAA19516.1| 1032|Homo sapiens LLGL protein.
          Length = 1032

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 726 PINLKCLXXIMWVSCS-----LLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII 571
           P   K +  I+W +C      ++ S G    S G  HC S ++ E L+T +  + II
Sbjct: 285 PFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETLVTLDFTSRII 341


>BC051466-1|AAH51466.1|  279|Homo sapiens LLGL1 protein protein.
          Length = 279

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 726 PINLKCLXXIMWVSCS-----LLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII 571
           P   K +  I+W +C      ++ S G    S G  HC S ++ E L+T +  + II
Sbjct: 113 PFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETLVTLDFTSRII 169


>BC028214-1|AAH28214.1|  467|Homo sapiens LLGL1 protein protein.
          Length = 467

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 726 PINLKCLXXIMWVSCS-----LLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII 571
           P   K +  I+W +C      ++ S G    S G  HC S ++ E L+T +  + II
Sbjct: 285 PFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETLVTLDFTSRII 341


>BC028037-1|AAH28037.1|  467|Homo sapiens LLGL1 protein protein.
          Length = 467

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 726 PINLKCLXXIMWVSCS-----LLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII 571
           P   K +  I+W +C      ++ S G    S G  HC S ++ E L+T +  + II
Sbjct: 285 PFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETLVTLDFTSRII 341


>X86371-1|CAA60130.1| 1057|Homo sapiens hugl protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -3

Query: 726 PINLKCLXXIMWVSCS-----LLNSSGCKAIS*GTAHCFSDVKEEDLITCNIETEII 571
           P   K +  I+W +C      ++ S G    S G  HC S ++ E L+T +    II
Sbjct: 286 PFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETLVTLDFHFRII 342


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,644,192
Number of Sequences: 237096
Number of extensions: 1949887
Number of successful extensions: 3108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3108
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)