Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.9  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   4.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 517 SNFNSIPHQHHSH 479
           S+ ++ PH HHSH
Sbjct: 424 SHIHATPHHHHSH 436


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 FQYHKNYM*NCNTRIKKVYYY 215
           +  + NY  N NT  KK+ YY
Sbjct: 91  YSNYNNYNNNYNTNYKKLQYY 111


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 HKNYM*NCNTRIKKVYYY 215
           + NY  N NT  KK+ YY
Sbjct: 98  YNNYNNNYNTNYKKLQYY 115


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 389 SIRHRVLK*KKVLEYFISLNLPDL 460
           SIRH V+    V  Y +SL+LP L
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPL 34


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 141 FDSIFQYHKNYM*NCNTRIKKVYY 212
           +++ +  + NY  N N   KK+YY
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYY 353


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = +2

Query: 545 LCVGAIKLQIISVSMLHVIKSSSLTSEKQWAVPHEMALHPELLSNEQLTHI 697
           +C+     Q+I V++ + I +++L  E+ W   +++   P+     ++ H+
Sbjct: 56  VCIKLKLSQLIDVNLKNQIMTTNLWVEQSW-YDYKLRWEPKEYGGVKMLHV 105


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = +2

Query: 545 LCVGAIKLQIISVSMLHVIKSSSLTSEKQWAVPHEMALHPELLSNEQLTHI 697
           +C+     Q+I V++ + I +++L  E+ W   +++   P+     ++ H+
Sbjct: 56  VCIKLKLSQLIDVNLKNQIMTTNLWVEQSW-YDYKLRWEPKEYGGVKMLHV 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,471
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)