Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30189.Seq
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    26   1.5  
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          25   1.9  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          25   1.9  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          25   1.9  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           25   2.5  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 454 ARFHPRCQTAHRRSKQNGSTEPPYS 528
           ARF P   T+HR S  N S+  P S
Sbjct: 344 ARFDPSALTSHRSSSANCSSAAPKS 368


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 386 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSXRKY 562
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 563 PHTSRRLGYNPAA 601
           P        NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 386 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSXRKY 562
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 563 PHTSRRLGYNPAA 601
           P        NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 386 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSXRKY 562
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 563 PHTSRRLGYNPAA 601
           P        NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 386 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSXRKY 562
           V  G G  +A +    Q++   +L     ++  +I   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGNKDAYVGDEAQSKR-GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 563 PHTSRRLGYNP 595
           P        NP
Sbjct: 103 PVLLTEAPLNP 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,490
Number of Sequences: 2352
Number of extensions: 16186
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)