Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30183.Seq
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    52   5e-09
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    39   4e-05
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.8  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = -2

Query: 713 HKPFT--VTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQ 540
           H+PFT  +T++ +S+       ++FL PK DE G P+   D  + F ELD F   +  GQ
Sbjct: 479 HQPFTYKITVNNQSNGNRKGTCRIFLAPKTDERGNPWLFRDQKIMFIELDKFTVNLKQGQ 538

Query: 539 SQITRSST 516
           + ITR+S+
Sbjct: 539 NTITRASS 546



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
 Frame = -1

Query: 411 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGY 271
           P  +++PKGT +G   QLFV +  Y+    +                   + PD +  GY
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGY 642

Query: 270 PFDR 259
           PFDR
Sbjct: 643 PFDR 646


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -2

Query: 653 KMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTD 513
           ++FL P++DE G P+   +    F ELD F   +  G + ITR ST+
Sbjct: 500 RIFLAPQFDERGNPWLFRNQKDMFIELDRFAVSLKQGTNTITRHSTE 546



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
 Frame = -1

Query: 411 PSRLMLPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGY 271
           P  ++LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 270 PFDR 259
           PFDR
Sbjct: 642 PFDR 645


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 296 FRTTNHSVIHSIAPSSSVLQTT*HVLQE 213
           + T   S+ HS+A S+ +L +  H+LQ+
Sbjct: 211 YSTDYSSLTHSLAASNHLLSSGQHLLQD 238


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 303 SVVPDNKPFGYPFDRPVFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNA 127
           + +P +  +  P    V L   N +T     SW+ +    SP+Y + L     + N NA
Sbjct: 176 AAIPTDAAYDVPAMSNV-LDVINVMTYDFHGSWAGVTAQNSPLYASPLDGEWQRDNLNA 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,614
Number of Sequences: 336
Number of extensions: 3197
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)