Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30183.Seq
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 34 0.13
03_05_0977 + 29355824-29357056 31 0.92
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 29 3.7
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.7
11_06_0313 + 22306497-22308938 29 4.9
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 29 4.9
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 29 4.9
03_02_0243 - 6744164-6744415,6744518-6745135 29 4.9
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 8.6
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 317 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 457
D +G G+YG N +V + +SLE I E+LN+ + F W
Sbjct: 24 DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70
>03_05_0977 + 29355824-29357056
Length = 410
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 209 DLLEEHVRLFEVLRKTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 358
D+L ++LF L N PNG L S +TD + S+ G G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 393 PKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVFLSTSNNLTCSSR 214
P + DG P+ L + PTPK++ +S N PF + + F L+C+S
Sbjct: 275 PGNSDDGNPYLLDDCKQEFNPTPKKN-CSRSCGSTNIPFPFGLEPGCFAKRRFQLSCASN 333
Query: 213 RS 208
R+
Sbjct: 334 RT 335
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 623 NGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFDSSKKTLYRWPKSTSS 462
+G P D+ + +L W +Q+ + I S +F+ S+ +Y P+ SS
Sbjct: 3489 SGIPSEFHDHLLKRRKLLWVIQEQASDLANICTSVLEFEGSRDGIYLIPEDKSS 3542
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -3
Query: 415 YAFEADAA*GYIRWIPLPAVCIRLSV*TDT*GVRAIQVCCSGQQTIRLSIRSPRLPQYFK 236
Y FE ++ +RW P + S+ + + + + S ++T ++ R +
Sbjct: 686 YIFETPSSEQNLRWNYAPELLGEPSLSDSSETPKQLPIIISAKRTGNIA----RFMNHSC 741
Query: 235 QPNMFFKKVLVYHEGELFPYL--FNIPHYTP 149
PN+F++ VL H E +P++ F I H P
Sbjct: 742 SPNVFWQPVLYDHGDEGYPHIAFFAIKHIPP 772
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 357 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 259
F +PYEPTP +++ F V D P DR
Sbjct: 79 FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 340 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 468
+I YK+ E + I L +H+P + + + +EH+S ++ L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 654 DDGVSGNIRFNIDCHSERLVV 716
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 293 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 442
G TD+ G D G+ +G + +K S PLG ++ V+ LN+SV
Sbjct: 55 GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,576
Number of Sequences: 37544
Number of extensions: 330959
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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