Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30182.Seq
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   6.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.8  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 112 LFFIVFKILLTIKSTVHFINY 50
           +F I F ++++  ST+HF+NY
Sbjct: 199 IFGISFLLIISY-STLHFVNY 218


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 676 RNNYNLALGAISIRWNY 626
           R NY L   A+ I W Y
Sbjct: 536 RENYTLPASAVGIAWLY 552


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 121 ISRLFFIVFKILLTIKSTVHFI 56
           I ++ F+VF  LLT  S+V ++
Sbjct: 2   IFKIHFLVFGALLTYVSSVEYL 23


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 95  QNFINHQKYCSFY 57
           +N+INHQ Y   Y
Sbjct: 369 ENYINHQNYVQGY 381


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 95  QNFINHQKYCSFY 57
           +N+INHQ Y   Y
Sbjct: 317 ENYINHQNYVQGY 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,140
Number of Sequences: 336
Number of extensions: 4241
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)