Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30182.Seq
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    47   2e-05
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    47   2e-05
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    30   2.6  
01_06_1437 - 37358912-37359226                                         29   4.5  
02_05_0376 + 28406547-28406870                                         28   7.9  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
 Frame = -3

Query: 672 IITTWH---WGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 511
           I+  W+   +G L  +G +D LDG++AR   G ++  GS+LDP+ADKVL+  + I++
Sbjct: 156 IVNEWYLPAFGTLALSGASDWLDGFLARKM-GINSVFGSYLDPLADKVLIGCVAIAM 211



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -2

Query: 505 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRY--FDVTHATAQLAPTFISK 335
           +DL+   L  L+V RD+ LV      R  SL     + S +   D  H   ++ P FISK
Sbjct: 214 KDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHRE-KVKPLFISK 272

Query: 334 VNTAVQLLLVGTTLASPVFG 275
           VNT  QL+LV   L  P FG
Sbjct: 273 VNTVFQLMLVAAALLQPEFG 292


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -3

Query: 651 GLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 511
           G+ + A +TD LDG+IAR  +   T  G+FLDP+ADK++VA   + L
Sbjct: 169 GIFLAAAVTDWLDGYIARKMQ-LGTPFGAFLDPVADKLMVAATLVLL 214


>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 690 LCNNPGIITTWHWGLL-VFAGITDLLDGWIARNWKGQSTK 574
           +  NPG+ T W W  L  F  +  LL  W+A  W   +TK
Sbjct: 1   MATNPGLFTEWPWKKLGSFKYV--LLAPWVAHGWYEVATK 38


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 412 PPPRTLSRYFDVTHATAQLAPTFI 341
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


>02_05_0376 + 28406547-28406870
          Length = 107

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 647 SPQCQVVII--PGLLHNPKYGRHCYSSDT*SGLG*WKDIFFPYNFPQIFP 790
           SP C+  I   PG  H+        +S   S L  W+++  PYNFP + P
Sbjct: 5   SPSCKATICRTPGNHHHGTTSELRAASRRASSL--WEEMVLPYNFPPLSP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,526,145
Number of Sequences: 37544
Number of extensions: 422151
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)