Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30182.Seq
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 257 IKVLCGITAASTIVSAVSYLVSKDT 183
           I  L  I+A+  I  A S LVSKD+
Sbjct: 242 INTLLSISASCVIAFATSALVSKDS 266


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 648 LLVFAGITDLLDGWI 604
           ++ FAG+ DLL  W+
Sbjct: 78  VMTFAGVNDLLGYWV 92


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 678 DYYITLNMGDIAILVIPK 731
           DYY  LN+G+I  +  P+
Sbjct: 43  DYYQNLNLGEIYYIYNPR 60


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 675 GIITTWHWGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADK 541
           G  T + W   + AG + + +  + +NW    T   S L+   +K
Sbjct: 411 GCRTPFQWDNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEK 455


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 649  PPVPGCNYS 675
            PPVPG NY+
Sbjct: 1654 PPVPGSNYN 1662


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,807
Number of Sequences: 438
Number of extensions: 5362
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)