Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30181.Seq
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   3.8  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   6.6  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.7  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   8.7  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 320  SCSTSIGRHYAGVPSFWLC*SSALKVLCGITAASTIVSAVSY 195
            S   SI R +A +P      S   ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 385 RYFDVTHATAQLAPTFISKV 326
           R+FD    T +L PT ISKV
Sbjct: 516 RFFDFAIPTTELKPTRISKV 535


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 295 TTLASPVFGYVDHPH*KSCVELLQPQL*CQPSVI*LVRTPTNY*RKKYEY 146
           TTL S      +H   K    LL PQ+ C  ++    R+P    +K Y Y
Sbjct: 260 TTLESDPIVNCEHDEKKVADNLLVPQVMCSSNISTFFRSPGG--KKLYHY 307


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 325 NTAVQLLLVGTTLASPVFGYVDHPH 251
           N   Q   +GT  A P+ G   HPH
Sbjct: 249 NDDFQTFRIGTVCARPLSGLNKHPH 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,250
Number of Sequences: 5004
Number of extensions: 31121
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)