Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30181.Seq
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    36   0.014
02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823     27   8.6  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 355 QLAPTFISKVNTAVQLLLVGTTLASPVFG 269
           ++ P FISKVNT  QL+LV   L  P FG
Sbjct: 264 KVKPLFISKVNTVFQLMLVAAALLQPEFG 292


>02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823
          Length = 76

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 154 YEYREVL*NISIPISRLFFIVFKILLTIKSTVHFIN 47
           +E RE + NIS+ + RLF  + +   T KS +  +N
Sbjct: 23  WENREFISNISLNVRRLFDFLLRFEATTKSKLASLN 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,838,706
Number of Sequences: 37544
Number of extensions: 168299
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)