Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30181.Seq
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical ...    42   1e-04
AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical ...    42   1e-04
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical
           protein F23H11.9b protein.
          Length = 222

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 29/40 (72%)
 Frame = -3

Query: 385 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGY 266
           R+F+   ++ Q+ PT +SK+NT +Q+ LV  +L+SPVF +
Sbjct: 148 RFFNPQVSSMQVVPTMMSKINTVLQITLVALSLSSPVFDF 187


>AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical
           protein F23H11.9a protein.
          Length = 246

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 29/40 (72%)
 Frame = -3

Query: 385 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGY 266
           R+F+   ++ Q+ PT +SK+NT +Q+ LV  +L+SPVF +
Sbjct: 172 RFFNPQVSSMQVVPTMMSKINTVLQITLVALSLSSPVFDF 211


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 72  MVNKILKTIKNNLEMGIEIFHNTS 143
           MVN++L TIK N E GI+     S
Sbjct: 183 MVNEMLSTIKYNREQGIDYLRKQS 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,407
Number of Sequences: 27780
Number of extensions: 171695
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)