Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30178.Seq
         (517 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p pro...   138   4e-33
AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB...   138   4e-33
AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA...   138   4e-33
AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p pro...    29   3.7  
AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA...    29   3.7  

>AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p
           protein.
          Length = 148

 Score =  138 bits (334), Expect = 4e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +3

Query: 3   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 182
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 7   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 66

Query: 183 KKEAPXNEKPEIVKTHLRXMIIVP 254
           KKEAP NEKPEIVKTHLR MIIVP
Sbjct: 67  KKEAPPNEKPEIVKTHLRNMIIVP 90



 Score =  116 bits (280), Expect = 1e-26
 Identities = 49/58 (84%), Positives = 55/58 (94%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           +M GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 91  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148


>AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB,
           isoform B protein.
          Length = 147

 Score =  138 bits (334), Expect = 4e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +3

Query: 3   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 182
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 6   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 65

Query: 183 KKEAPXNEKPEIVKTHLRXMIIVP 254
           KKEAP NEKPEIVKTHLR MIIVP
Sbjct: 66  KKEAPPNEKPEIVKTHLRNMIIVP 89



 Score =  116 bits (280), Expect = 1e-26
 Identities = 49/58 (84%), Positives = 55/58 (94%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           +M GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 90  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 147


>AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA,
           isoform A protein.
          Length = 148

 Score =  138 bits (334), Expect = 4e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +3

Query: 3   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 182
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 7   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 66

Query: 183 KKEAPXNEKPEIVKTHLRXMIIVP 254
           KKEAP NEKPEIVKTHLR MIIVP
Sbjct: 67  KKEAPPNEKPEIVKTHLRNMIIVP 90



 Score =  116 bits (280), Expect = 1e-26
 Identities = 49/58 (84%), Positives = 55/58 (94%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           +M GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 91  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148


>AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p
           protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 302 G*KFFRCKCRQLNRPSGNDDHVSQVSLHDLWLLIXRSLFLGATQLLDQCHWFTFKTTSEP 123
           G +F     R L   +G +   +Q+  H  WLL+  S FL          W   +++  P
Sbjct: 187 GAQFLMPTSRALLELTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRP 246

Query: 122 PAR 114
           PA+
Sbjct: 247 PAQ 249


>AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA
           protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 302 G*KFFRCKCRQLNRPSGNDDHVSQVSLHDLWLLIXRSLFLGATQLLDQCHWFTFKTTSEP 123
           G +F     R L   +G +   +Q+  H  WLL+  S FL          W   +++  P
Sbjct: 187 GAQFLMPTSRALLELTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRP 246

Query: 122 PAR 114
           PA+
Sbjct: 247 PAQ 249


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,211,374
Number of Sequences: 53049
Number of extensions: 365439
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)