Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.56 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    25   0.56 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    24   1.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.2  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   5.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   9.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 576 LKKPILTELMNGCPRHAYDPKKQMGIYEEYQTYLSSYTPEXIEW 707
           +K P+L +L+   P H  D +K+  I +       ++  +  +W
Sbjct: 259 VKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFRRKIYKW 302


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 66  YSFFGSINLWGKILTEFQWVTI 1
           Y FFG++ LW ++ + F  + +
Sbjct: 89  YHFFGTLKLWSQLFSTFAGIEV 110


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 507 SYGFDHYLLKTPACDLVSVLALKL 578
           +Y F+++++ +P CD +S +   L
Sbjct: 28  NYDFENFVIISPRCDKISAICFLL 51


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 390 SSIITLLETFNHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFHFPS*GTKCTAAGF 211
           S++ T L T  HS   PY  ID +  F +  N+   +   S    F  P    + + +  
Sbjct: 7   STLKTHLRT--HSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSS 64

Query: 210 STFHSR 193
            T H R
Sbjct: 65  VTTHMR 70


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 390 SSIITLLETFNHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFHFPS*GTKCTAAGF 211
           S++ T L T  HS   PY  ID +  F +  N+   +   S    F  P    + + +  
Sbjct: 263 STLKTHLRT--HSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSS 320

Query: 210 STFHSR 193
            T H R
Sbjct: 321 VTTHMR 326


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 315 EFKRNRNILYRISFT 271
           E+KR + +LYRI  T
Sbjct: 306 EYKRTKKLLYRIPVT 320


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 315 EFKRNRNILYRISFT 271
           E+KR + +LYRI  T
Sbjct: 131 EYKRTKKLLYRIPVT 145


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 567 ALKLKKPILTELMNGCPRHAYDPKKQMGIYEEYQ 668
           A KLKK I   + NGC +   + K++  +++ +Q
Sbjct: 55  AEKLKKGITETMKNGCVK--CEQKQKEDVHKVFQ 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,954
Number of Sequences: 336
Number of extensions: 3860
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)