Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    31   0.15 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   1.4  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   2.5  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    26   5.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   7.6  

>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 212 KPAAVHFVPQEGKWNATN*LVKLI-RYKIFLFLLNSPLKSMRGYGEEKLWLKVSKS 376
           K + + F PQE    A++ LVKL+   KI+ +LL  P +S R     + W+KV +S
Sbjct: 96  KGSVIQFHPQE--IFASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPES 149


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 412 VPVLKRTVVRSEVLNTHLSVTVTDRTISLINDP 510
           VP+LKR + +       L+V +TD    L+ DP
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPDP 289


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 298 EYFVSDKFHQSIRRVPLPFLRNEMYSCWLQYLPLTPKFFISRWK 167
           E+  +  +H+S+R +PL   R       +QY P+ P FF   WK
Sbjct: 129 EFLHNKLYHKSVRIIPLKIDRYARLVAGVQYYPI-PHFF---WK 168


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 244 FLRNEMYSCWLQYLPLTPKFFISRW 170
           F  +E+YS +  YL  +  FF  RW
Sbjct: 285 FWESEVYSKYFDYLDKSGNFFYERW 309


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 GRFEIGIASELPPAYKKFWREWKVLKPAAVHFVP 238
           GR  IG A  L    K     W++LK  +VH+VP
Sbjct: 91  GRLHIGHA--LNKILKDIINRWQLLKGRSVHYVP 122


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 295  IPIPLKFPAEINEGIWGGEAVVKG 366
            I +PL   AEI +G+   EAV KG
Sbjct: 1890 IIVPLAAGAEIRQGLTASEAVAKG 1913


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -3

Query: 421 VLAPSSEVPCVVYHHAFGNL*PQLLLPISPH*FQRGI*EE*EYFVSDKFHQSIRRVPLPF 242
           +++PSS +    +H    +L P   L +SP+ +  G  +    F S  F  ++  +    
Sbjct: 510 IVSPSSLIENG-FHPIAIDLRPNEFLVVSPNSYHMGFHQGFSSFESVNF-ATVNWIKDGL 567

Query: 241 LRNEMYSCWLQYLPLTPKF--FISRWKL*RNPNFKSSFLLKCFRQL 110
           L + +       +P +  +   I    L +NP F S +L+KCF  +
Sbjct: 568 LNSSISVLKSMRIPSSVSYEAVIISMVLSKNPCFSSEWLIKCFEDM 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,575
Number of Sequences: 5004
Number of extensions: 66268
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)