Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30176.Seq
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0243 - 1601977-1602834,1602857-1603063                           30   2.0  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    30   2.6  
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152...    30   2.6  
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469...    30   2.6  
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402...    29   4.6  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    29   4.6  
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    28   8.0  

>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 588 ILTELMNGCPRHAYDPK-KQMGIYEEYQTYLSSYTPE 695
           +L   MNGCP   YD K K+M   E   +Y   Y PE
Sbjct: 302 VLLVAMNGCPSFLYDTKGKRMVTGELLSSYQRFYLPE 338


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -1

Query: 465 EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPYPLID 325
           ++++ NF +Y  +   W+ V ++P+   +T + +FN+   +PY +I+
Sbjct: 305 KITVTNF-NYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVIN 350


>05_05_0339 +
           24213179-24213821,24214402-24214623,24215035-24215282,
           24215385-24215524,24215579-24215753
          Length = 475

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = +1

Query: 232 RSSRREVERDELTGETYPIQNI--PI-PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RR 396
           R   R +  DE+  + + +  +  P+ PLK    + E +W  + V+ G    + R     
Sbjct: 114 RLGDRTLYADEILRDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVINGLPSTETREVFGE 173

Query: 397 VPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTIS 495
           +  YW   ++  V+ S       S+    R I+
Sbjct: 174 IGRYWKERIRPPVIISLAKGIEASIDPVPRIIT 206


>01_06_1031 -
           33945681-33945822,33946502-33946641,33946748-33946995,
           33947355-33947576,33948188-33948839
          Length = 467

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
 Frame = +1

Query: 232 RSSRREVERDELTGETYPIQNI--PI-PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RR 396
           R   R +  DE+  + + +  I  P+ PLK    + E +W  + V+ G    D R     
Sbjct: 117 RLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGE 176

Query: 397 VPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTIS 495
           +  YW   +   ++ S       S+    R I+
Sbjct: 177 IGRYWKERITAPIILSLAKGIEASLDPLPRIIT 209


>01_07_0128 +
           41238510-41239146,41239420-41239461,41240076-41240297,
           41240909-41241156,41241296-41241435,41241904-41242027
          Length = 470

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
 Frame = +1

Query: 232 RSSRREVERDELTGETYPIQNI--PI-PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RR 396
           R   R +  DE+  + + +  I  P+ PLK    + E +W  + VV G    + R     
Sbjct: 112 RLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEE 171

Query: 397 VPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTIS 495
           +  YW   +   V+ S       S+    R I+
Sbjct: 172 ISKYWKERISVPVIISLAKGIEASLDPIPRIIT 204


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 347 PPHIPSLISAGNLRGIGIFCIG*VSPVNSSRSTSLLE 237
           PP +PS++    L  + + C   VSP++S  S S+ E
Sbjct: 126 PPKVPSIVPTAALAPVTVPCSSFVSPMHSGDSVSVDE 162


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 439 RSEVLNTHLSVTVTDRTISLINDPMG 516
           R+ VLNTH+S+   D TISL++  +G
Sbjct: 488 RNIVLNTHMSLKEGDNTISLLSVMVG 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,852,589
Number of Sequences: 37544
Number of extensions: 388329
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)